RNA id: XM_026944791.2


Basic Information

Item Value
RNA id XM_026944791.2
length 2093
RNA type mRNA
GC content 0.55
exon number 4
gene id zic1
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 29025991 ~ 29033884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttgttgttgttgttgttatgcaAAGGCTATTGTACTTATAACTACAATGTCTAGAGTCACATCTAAAAAGCAAAGCAATCGTCACGTGACTGCAAGGAAGATCTATACAGGTGAAAtcaacagtcagtctgcctcctcactatatacaatataccACAGATTGATGATGTAAACCGACCAATCGCGCCGGCGCTGAGGAAGCTCGCTCTGTTATTTGGTAAAGGTGAATCTTAGTAAAAGGAGGGGTAGGCGAAAAGAAGCTTACGCTCACCAATGACCGGCCACGCACGGGGGTCACGTGCTGCCCCCAGCTCCCTTCCCCTCCCCTCCCCATTCATCAGGGGTGGACTGTGTGTTGTCTTTTCAATTCATTTATCTGCAGGAATGATTGCGACTATCAGTCCGAAGCAGCTCGACTCGCGGAGGAGGAGGTGAAAAGTTGGGGAAGAAGATAAACCTGCAGAAAGGACAGAGACAACAATAATCGCGCGTGATTTTTGCGCGCGCGCATCGTCGGATGAGCTGGACTTGGGGGGAAATATTTTCCCTctccacttaaaaaaaaaaaaaaaaaaaaaaaaaaagtaaatagaaGTGTACAGGAGACTGGAGTTTGCTTGGGTTGCATTAAGTCAGAGAGAAATAACCCCAGCAGAGACAGTTGTTGTAGAGTTGCTGTTGTCTTGTGCGTGATTTCTCTCGGTCTGCTCCTGTTGCGGGCTAAAGATGCTCTTGGACGCAGGAGCGCAGTATCCGGCGATCGGAGTGACTACTTTCGGTTCCTCCAGACACCACTCAGCGGGCGAAGTGGCGGACCGCGAAGTGGCTTTGGGGATCAATCCGTTCGCAGACGGCATGGGCGCGTTCAAAATCAACCACGGCTCGCATGAGCTCGGTTCCGCCGGCCAGGCAGCGTTCTCCTCGCAGGCGCCCGCCGGGTACGCGGCCGCGGCCGCCCTGggacaccaccaccatcaccatcaccacgcGACCCACGTTGGCTCTTACTCCACGGCGGCAGCTGCGGCGTTCAATTCCACGAGGGACTTTCTCTTCCGGAACCGGGGCTTCGGAGACGCGACAGGCGCGCAGCACAGCCTCTTCGCCTCTGCCGCCGGTAGCTTCGCGGGGCCGCACGGGCACTCGGACGCCGCCGGGCACCTGCTTTTCCCAGGACTGCACGAGCAAGCAGCGACGCACGCATCCGCCTCGAGTGTGGTGAACGGTCAGATGCGCCTGGGGTTTTCCGGCGACGTGTACGGCCGGGCCGAGCAGTACGGCCACGTGGCGAGCCCCAGGTCCGATCCACACTATGCCTCAACGCAGCTACACGGCTACGGCCCCGTGAACATGAACATGGCTGCACATCACGGCGCCGGTGCCTTCTTCCGTTACATGAGGCAACCGATCAAGCAAGAGCTCATCTGCAAATGGATCGAACCGGAGCAGCTCAGCAACCCGAAAAAGTCCTGCAACAAAACTTTCAGCACCATGCACGAGCTCGTCACTCACCTGACCGTGGAGCACGTCGGCGGACCCGAGCAGTCGAATCACATCTGTTTTTGGGAAGAGTGCACACGGGAAGGGAAACCGTTCAAGGCCAAATATAAGCTCGTGAACCATATCAGAGTGCACACCGGAGAGAAACCGTTTCCGTGTCCGTTCCCCGGCTGTGGCAAAGTGTTTGCCCGATCAGAAAACCTGAAAATCCACAAGAGGACGCACACAGGTGAAAAACCTTTTAAGTGTGAGTTTGATGGCTGTGACAGGCGGTTTGCTAACAGCAGCGACCGAAAGAAACACATGCACGTCCATACGTCAGATAAACCATATCTGTGCAAAATGTGCGacaaatcatacacacaccccaGCTCCCTCCGGAAACACATGAAGGTTCACGAGTCGTCGAATCAGGGCTCGCAGCCGTCTCCAGCAGCCAGCTCGGGCTACGAGTCCTCCACTCCTCCTACCATCGTCTCTCCATCCACAGAGAACCAGGGCAGCAGCTCCATATCGCCTTCAGCCTCCTCCACCGTGCACcacaccaccacctccaccctgGCCTCAAATTTTAACGAATGGTACGTGTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19130 lncRNA downstream 5151 29021637 ~ 29021844 (-) True G16228
TU18806 lncRNA downstream 573895 28436831 ~ 28453100 (-) True LOC113545501
XR_003404618.2 lncRNA downstream 573895 28437861 ~ 28453100 (-) False LOC113545501
XR_004579059.1 lncRNA downstream 592453 28417116 ~ 28434542 (-) True LOC117598396
TU18723 lncRNA downstream 820395 28206157 ~ 28206600 (-) True G15852
TU19203 lncRNA upstream 175523 29209407 ~ 29212056 (-) True G16291
TU19299 lncRNA upstream 514326 29548210 ~ 29604197 (-) False dipk2ab
TU19490 lncRNA upstream 763869 29797753 ~ 29798971 (-) False pcolce2b
TU19515 lncRNA upstream 839723 29873607 ~ 29953285 (-) True G16566
TU19531 lncRNA upstream 870594 29904478 ~ 29907424 (-) True G16582
XM_026944783.2 mRNA downstream 160508 28851361 ~ 28866487 (-) True agtr1b
XM_026944784.2 mRNA downstream 165772 28851361 ~ 28861223 (-) False agtr1b
XM_026944782.2 mRNA downstream 179013 28836332 ~ 28847982 (-) True cpb1
XM_026944829.2 mRNA downstream 193530 28807495 ~ 28833465 (-) True gyg1b
XM_026944773.2 mRNA downstream 223769 28791862 ~ 28803226 (-) True bdh1
XM_026944854.2 mRNA upstream 514282 29548166 ~ 29604238 (-) True dipk2ab
XM_026944711.2 mRNA upstream 717199 29751083 ~ 29754081 (-) True chst2b
XM_026944815.2 mRNA upstream 764905 29798789 ~ 29814814 (-) True pcolce2b
XM_034305812.1 mRNA upstream 801045 29834929 ~ 29852199 (-) True acbd5a
XM_034305813.1 mRNA upstream 801045 29834929 ~ 29851583 (-) False acbd5a
trnar-ccu_3 other downstream 770678 28256245 ~ 28256317 (-) True trnar-ccu_3
trnar-ccu_2 other downstream 771428 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_1 other downstream 775867 28251056 ~ 28251128 (-) True trnar-ccu_1
trnam-cau other downstream 781034 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu other downstream 781581 28245342 ~ 28245414 (-) True trnar-ccu
trnaf-gaa other upstream 955334 29989218 ~ 29989290 (-) True trnaf-gaa
trnah-gug other upstream 1599182 30633066 ~ 30633137 (-) True trnah-gug
TU19913 other upstream 1606814 30640698 ~ 30642974 (-) True G16900
LOC117595698 other upstream 1752079 30785963 ~ 30789410 (-) True LOC117595698
TU20271 other upstream 1959185 30993069 ~ 30997169 (-) False telo2

Expression Profile