RNA id: XM_026944829.2


Basic Information

Item Value
RNA id XM_026944829.2
length 1834
RNA type mRNA
GC content 0.49
exon number 7
gene id gyg1b
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28807495 ~ 28833465 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGAGGGCAGCGCGCGCGCGGGTGTATAAATGCGTTGGTGCGCTCGCGGTGAATCCccctgtgtgcatgtgagcGCGTGCTGAGGGTCCGAGCTCGGCGGCAGTGTGGCTGGAATAAGTGAGGAGGAAGAGACATGGCAGACCAGGCATTCGTCACCTTGGCCACGAACGATAAATATGCTAAAGGCGCAGTGGTGCTGGGGAAGTCCCTGAGGAACCACAAGACCTCCAAGAAACTGGTGGTGCTCATCGGACCCCATGTGTCGGAACCGTCCAGGGCAGTGCTTCACACACTGTATGATGAGGTCAGGCTGGTGGACGTGTTGGACAGTGGGGACACCGCACACCTGGCCATGATGCAGAGACCAGACCTGGGAGTGACCTTCACTAAGCTCCACTGCtggacactcacacactactccaaatgtgtgtttatggacGCAGACACTATGgCGGTAGCGAACATTGATGAGCTGTTTGACAGAGAGGAGTTATCAGCAGCTCCAGATCCCGGATGGCCCGACTGCTTTAACTCCGGCGTGTTCGTCTTCCGCCCCTCCAACGAGACCTATGGCAAACTCCTTCAGTACTGTACAGAGCATGGCAGCTTCGACGGTGGAGATCAGGGAGTACTCAATGGCTACTTCAGTGACTGGGCCACAGCAGACATCAGAAAACACCTCCCGTTTATCTACAATATGAGCAGCATAGCAATCTACACCTACCTTCCTGCCTTTAAACAGTATGGTGCAAACGCCAAGGTGGTGCACTTCCTGGGAAAGACGAAGCCGTGGAGCTACACTTACGACCCTAATCAGAGGAGAGTGCAGGGGAACGTGCAGGACGCTTCATCGCACCCTGGCTATCTCCTGGAGTGGTGGAGACTTTACAGCAGCTGTGTGCTTCCCCTGAAGAAACAGGAACATGAAGACCAGCCTTTTGATATCAGCGCTCAGGAGGAGTTGCAGCCTCAGGCCCTGCCCGGCCCGCCTCCTCTCTCCTCAGCTGAGCGGAAACAGCGCTGGGAACAGGGCCAAGCTGACTACATGGGAATGGACTCTTTTGACAACATCGAGAAGAAGCTTGCTGCTTTCCTGAAATAAGGAATGGGGGGGTGAAGGGAGCAACGTTGTAAAAAGGGCTCCTATACAGTTTTAGAGTGATGGTTTGGAAACATGAGTGTAGATCCCATGGCTACAGTGCCATCCTGACTGGTTTTCCTTCAGCTATGCAGAACTGTCACTGCAGCGTGCCAACCTCGTCACcaattttctttcttaaaactTTTGTACACTGTGAAACTGGTATTCATTTTGACTCCGTGCTCTTcaccaaaaaacaaaagcagaaacTTTTCTTTATATTCCAGATAGTCATGTTTTATAAATCGAGCTGAATTCCGCTGTTTACACAGAGGAGGTGATGCTTTAATAGCACAGATTTCTGCGACGGCGTCGTTAGTGTTCTCATGTACCAGTCTGCTGACGCCGATCACATGACTCGCTCTCGTCATCGCTCAGTAGTGACGTCTTGTTCcagcactttttatttaaagcactTAGACTTGAAcgtaagctttttttttttttttttttttttttttttttgcttggtcACAAACTGTTACCTTGGTTTTGCCTAGAGTTTACAGCTGACTTTAAATCTGAGTTTTCATGCACTTAAGTCTACAGTTCTGCGCATTGTGAATGTCTGCATTAGTCCATGTTCACATAATGTGAGGTGAATGCTCTTCAACTCATCTGATGCTGCTGCCTTCTCTCTCATTGCAAGTGTCTTACATTTTCATCTGCACAATAAACATTGAGATCGTTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008466 glycogenin glucosyltransferase activity molecular_function

KEGG:

id description
K00750 GYG1, GYG2; glycogenin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18806 lncRNA downstream 354395 28436831 ~ 28453100 (-) True LOC113545501
XR_003404618.2 lncRNA downstream 354395 28437861 ~ 28453100 (-) False LOC113545501
XR_004579059.1 lncRNA downstream 372953 28417116 ~ 28434542 (-) True LOC117598396
TU18723 lncRNA downstream 600895 28206157 ~ 28206600 (-) True G15852
TU18720 lncRNA downstream 630649 28175684 ~ 28176846 (-) True G15849
TU19130 lncRNA upstream 188172 29021637 ~ 29021844 (-) True G16228
TU19203 lncRNA upstream 375942 29209407 ~ 29212056 (-) True G16291
TU19299 lncRNA upstream 714745 29548210 ~ 29604197 (-) False dipk2ab
TU19490 lncRNA upstream 964288 29797753 ~ 29798971 (-) False pcolce2b
TU19515 lncRNA upstream 1040142 29873607 ~ 29953285 (-) True G16566
XM_026944773.2 mRNA downstream 4269 28791862 ~ 28803226 (-) True bdh1
XM_034303139.1 mRNA downstream 169493 28601038 ~ 28638002 (-) False wdr37
XM_034303135.1 mRNA downstream 169494 28601038 ~ 28638001 (-) False wdr37
XM_034303137.1 mRNA downstream 171103 28601038 ~ 28636392 (-) False wdr37
XM_034303134.1 mRNA downstream 171103 28601038 ~ 28636392 (-) True wdr37
XM_026944782.2 mRNA upstream 2867 28836332 ~ 28847982 (-) True cpb1
XM_026944783.2 mRNA upstream 17896 28851361 ~ 28866487 (-) True agtr1b
XM_026944784.2 mRNA upstream 17896 28851361 ~ 28861223 (-) False agtr1b
XM_034306194.1 mRNA upstream 192526 29025991 ~ 29029485 (-) True zic1
XM_026944791.2 mRNA upstream 193530 29026995 ~ 29033884 (-) False zic1
trnar-ccu_3 other downstream 551178 28256245 ~ 28256317 (-) True trnar-ccu_3
trnar-ccu_2 other downstream 551928 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_1 other downstream 556367 28251056 ~ 28251128 (-) True trnar-ccu_1
trnam-cau other downstream 561534 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu other downstream 562081 28245342 ~ 28245414 (-) True trnar-ccu
trnaf-gaa other upstream 1155753 29989218 ~ 29989290 (-) True trnaf-gaa
trnah-gug other upstream 1799601 30633066 ~ 30633137 (-) True trnah-gug
TU19913 other upstream 1807233 30640698 ~ 30642974 (-) True G16900
LOC117595698 other upstream 1952498 30785963 ~ 30789410 (-) True LOC117595698
TU20271 other upstream 2159604 30993069 ~ 30997169 (-) False telo2

Expression Profile