RNA id: XM_026944831.2


Basic Information

Item Value
RNA id XM_026944831.2
length 1575
RNA type mRNA
GC content 0.47
exon number 7
gene id si:ch211-79k12.1
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25713466 ~ 25722244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGATAAATAGCCTGAGCAAACTTTCGCTTTAGAAGTTGATTTTCAAACGCTGAGGAGGAAGAAATTAAGCTGCAGACAAAATGAGGTTCTTCGTTCTGCTCACCGCGGTGATCTTCGCACTCCTGCGGAATAGCACCGcTTCTCTGTTCGTGCAAGGTCCTACTGAATCTGTCatggagggagagagtgtgACTCTGGAATGTCTTGACTCCGAATCTGAGACCAACATGAGCTCAGTGCACTTTGAAAAGCTGTCAAGGCACATGCAGATGTGGCATCGGCTGGATATGTATGGCTACGGCTATTACTACCGCCGCTGTTTCTGGTATGATGCGGACGTGAGGAGAGACGATGGCCGTCTGCTTCTCACGTTAGGAAGAGTCCAGACCTGGTCTGCTGGCATGTATCGCTGTGTGTCTGACAACGCCACCAATGTGGACAATTCATCACTGCCTTTTAAGCTAACAGTGCACTATATGCGAGAGGTGTCGGTGAACAGGGTCGGCGCCAACATTTTCTCTCACTACCTCACCCCACAGGATGACCTGCGTGTACCACTAGGGGATGATGTAGAGCTGGACTGCTCTACCTCTGCCTCTGAGACTCCTCAGTACTCCTGGCTCAAAGAGGGAGAGGACTGGATGGTTCCCTCCAGTAAGCTAAAGCTGAAGAAAGTGAGGGAGCAGGACAGTGGGAAATACACCTGCACTGCTCAGCACCCATCTGTGAGCTCGCTAACCAAGAAACGGACCATCAGCCTCACTGTCCTGCCAGAGGACGCCGCATGGTATGAATCGACAACTGGCCAATGTCTCATCGTGTCTGCAGCAGGAACAGTTCTCCTGGTGATCATCCTCTCCATGATGGTCTTCTTGTGCTGCCGGGCCAGACAGAACAAGAGCAAGGGCCCAATTGATGACCACTCCCAGAAGAAGCCTATCTACAAGAACAGCGTGGAGTCTCTGGCTTCCACTGCTGGAGACAAACAGCCGCTGGTATAATGAGTGAGATGGAGTGGGGAGCGAGGTGGATGAGGACAGGGAGTGTTGAAGTTTAGGAGAGAAAGAACCTGCTAGATTGGATAAGAGATGGTTTGCTAGTGAAACACAGGccgtgaattgaattgaaggcAGTAGGAAAAGGGTGTGTGgaaaagatagacagacatgATTGTTTCATGGTAATGGTTCCAATTCTGCAGGTTTGGCAGCAGTACTCCTCAACAAAAGGTGTGCAATTTTCTCTGTATTGATttcacaacacaacaaaattgAGATTCACGCTTGTTGTCAAAGACAGGGACTGAGAATGCTAGTGTGAGCTTCAAATCTCTGATCTTTTTGCGATATAACCGCATGCGAACCCTTTCCTGCTAGTCATTCTTCTAGCCTTGAGTTGTAAACAAGTCTCTTTCACTGGCAGCGTCATTCTGTTAGACAATCATTCTAGTGTACACAATATATTACAGAAACTTTAGGTGAAGTGTTTATTCTTGTGTTCTCTATTCTACATGACAGTacctttaataaatgaaactgtaagactatataaaaaatataatagcaCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17220 lncRNA downstream 16631 25636104 ~ 25696835 (-) True G14464
TU17202 lncRNA downstream 156696 25551138 ~ 25556770 (-) False cadm4
XR_003404619.2 lncRNA downstream 202214 25498527 ~ 25511252 (-) True LOC113545502
TU17193 lncRNA downstream 283956 25408078 ~ 25429510 (-) True G14444
TU17191 lncRNA downstream 301747 25408078 ~ 25411719 (-) False G14444
TU17270 lncRNA upstream 35830 25758074 ~ 25763495 (-) False fxyd7
TU17271 lncRNA upstream 35830 25758074 ~ 25763495 (-) False fxyd7
TU17272 lncRNA upstream 35830 25758074 ~ 25763764 (-) True fxyd7
TU17274 lncRNA upstream 99505 25821749 ~ 25823635 (-) True G14514
TU17275 lncRNA upstream 112760 25835004 ~ 25837637 (-) True G14515
XM_026944806.2 mRNA downstream 7951 25551130 ~ 25705515 (-) False cadm4
XM_026944807.2 mRNA downstream 123764 25551130 ~ 25589702 (-) False cadm4
XM_026944805.2 mRNA downstream 123764 25551130 ~ 25589702 (-) True cadm4
XM_026944870.2 mRNA downstream 185535 25521489 ~ 25527931 (-) False rps19
XM_026944871.2 mRNA downstream 185535 25521489 ~ 25527931 (-) True rps19
XM_034309064.1 mRNA upstream 35811 25758055 ~ 25764694 (-) False fxyd7
XM_026944866.2 mRNA upstream 35811 25758055 ~ 25763701 (-) False fxyd7
XM_026944864.2 mRNA upstream 35811 25758055 ~ 25763561 (-) False fxyd7
XM_026944720.2 mRNA upstream 50348 25772592 ~ 25840943 (-) False nrp1a
XM_026944719.2 mRNA upstream 50348 25772592 ~ 25840943 (-) True nrp1a
XR_004578410.1 other downstream 123763 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 123763 25547057 ~ 25589703 (-) False cadm4
TU16925 other downstream 309160 25400756 ~ 25404306 (-) False G14258
TU16933 other downstream 309160 25400756 ~ 25404306 (-) False G14258
TU16922 other downstream 309160 25401945 ~ 25404306 (-) False G14258
XR_004578761.1 other upstream 744567 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 2523098 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 2523646 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 2528812 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 2533251 28255495 ~ 28255567 (-) True trnar-ccu_2

Expression Profile