RNA id: XM_026944871.2


Basic Information

Item Value
RNA id XM_026944871.2
length 567
RNA type mRNA
GC content 0.53
exon number 6
gene id rps19
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25521489 ~ 25527931 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGCCCCTGTTAACACCGATAGGAAACCCCGCTATATCCTCTTCCTTTTGCTGTCCGCAAGCAAGATGCCAGGCGGTGGTGTAACAGTAAAAGACGTCAACCAGCAGGAGTTTGTCCGGGCGCTGGCTGCCTTCCTGAAGAAGTCAGGAAAGCTGAAGGTGCCAGACTGGGTGGACATCGTTAAGCTGGCTAAGCACAAAGAGCTGGCCCCCTGCGATGACAACTGGTTCTACATCAGAGCTGCCTCCACAGCACGTCACCTTTACCTGCGTGGTGGTGTCGGCGTAGGCTCCATGATCAAGATCTATGGAGGCCGTAAGAGGAACGGCGTGTGCCCTTCTCACTTCAGTGTGGGCTCCAAGAACGTGGCTCGCAAAGTTCTTCAGGCCCTGGAGGCTCTTAAGATGGTGGAGAAGGACCCCAACGGTGGGCGCAGACTGACTCCACAGGGCACCAGGGACTTGGACAGAATTGCCGGCCAGGTGACGAAGAGCCACTGAATATTATTTCGgTTGCAGCTGCAAGCAAGAAGTcttgaaatgtaaaataaactttGAGAACTCAAA

Function

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0035284 brain segmentation biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0045646 regulation of erythrocyte differentiation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02966 RP-S19e, RPS19; small subunit ribosomal protein S19e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404619.2 lncRNA downstream 10237 25498527 ~ 25511252 (-) True LOC113545502
TU17193 lncRNA downstream 91979 25408078 ~ 25429510 (-) True G14444
TU17191 lncRNA downstream 109770 25408078 ~ 25411719 (-) False G14444
TU16932 lncRNA downstream 117183 25400756 ~ 25404306 (-) False G14258
TU17202 lncRNA upstream 23207 25551138 ~ 25556770 (-) False cadm4
TU17220 lncRNA upstream 108173 25636104 ~ 25696835 (-) True G14464
TU17270 lncRNA upstream 230143 25758074 ~ 25763495 (-) False fxyd7
TU17271 lncRNA upstream 230143 25758074 ~ 25763495 (-) False fxyd7
TU17272 lncRNA upstream 230143 25758074 ~ 25763764 (-) True fxyd7
XM_026944771.2 mRNA downstream 34064 25443977 ~ 25487425 (-) False bcam
XM_026944769.2 mRNA downstream 34065 25437867 ~ 25487424 (-) True bcam
XM_026944770.2 mRNA downstream 34066 25437867 ~ 25487423 (-) False bcam
XM_026944882.2 mRNA downstream 184880 25335601 ~ 25336609 (-) True LOC113545493
XM_034305955.1 mRNA downstream 188390 25318286 ~ 25333099 (-) False osgin2
XM_026944806.2 mRNA upstream 23199 25551130 ~ 25705515 (-) False cadm4
XM_026944807.2 mRNA upstream 23199 25551130 ~ 25589702 (-) False cadm4
XM_026944805.2 mRNA upstream 23199 25551130 ~ 25589702 (-) True cadm4
XM_026944831.2 mRNA upstream 185535 25713466 ~ 25722244 (-) True si:ch211-79k12.1
XM_034309064.1 mRNA upstream 230124 25758055 ~ 25764694 (-) False fxyd7
TU16925 other downstream 117183 25400756 ~ 25404306 (-) False G14258
TU16933 other downstream 117183 25400756 ~ 25404306 (-) False G14258
TU16922 other downstream 117183 25401945 ~ 25404306 (-) False G14258
TU16407 other downstream 974652 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 1120734 24391530 ~ 24400755 (-) False si:dkey-92i15.4
XR_004578410.1 other upstream 19103 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 19126 25547057 ~ 25589703 (-) False cadm4
XR_004578761.1 other upstream 938880 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 2717411 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 2717959 28245890 ~ 28245961 (-) True trnam-cau

Expression Profile