RNA id: XM_026944880.2


Basic Information

Item Value
RNA id XM_026944880.2
length 6074
RNA type mRNA
GC content 0.49
exon number 22
gene id pard3aa
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26038040 ~ 26419039 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttgttgctgttgttctgcGCGTTAATATGAAAGTGACGGTGTGTTTCGGTAGGACCCGGGTGGTCGTGCCGTGCGGAGACGGCAACATTAAAGTCCGGAGCCTTATCCAGCAGGCCATCATGAGATACCGGAAAGCCATAGCGAAGgaCCCAGCCTATTGGATCCAGGTTCACCGGTTGGAGCATGGCGATGGCGGCATCCTAGACTTGGATGATGTGTTATGTGACGTTGCTGATGACAAAGACAGGctgGTGGCGGTGTATGATGAGCAGGACCCTCATCATGGAGGAGACGGCACAAGCGCAAGCTCCACTGGCAGCCAGAGTCCAGACGTGTTCAGCAGGGGAGAGATCAGCTCCGGCACACCATCTGCCTTCCAGCCGTACCAGAACAGCAGCGAGATCGAGGTCACACCATTGGCCCTGCGCACCAacATGCGTCTGCAAGTGAGGCGCAGTAGTGATCCGGCTCTCGTGGGTCTGCCAGAGACCCCACTCCAACCAGAAGAGCCGTCCAGGAAGAACCCGACACGCTGGTCCACCACGGCTGGTTTCCTCAAACCCAACGCCACCAGTGGAACCAACAGCTTGGAGCGCAAGGTTAAGGGACCGGCTGGCTACCGCAGTCTTCCCCGTGACACAGCAGCATGGGCCAACCAGTTCCACAGAGAGGGCGCACGCTCATCCCTCAGTGCCAATCATCCCATGGTGGACCGCTGGCTTGAACGCCAAGAGCAGgatgaagaggaagaagagaggaggagagacgaAGGCAAGAATGGACGGATAGAACCAGTGGGCCGAGCGGACTCGATCTCTCTAGATGACCTGCTCAAACCGGTGGAAGTATCTAATGGCGGCGGGCCGCTGGGAATCCACGTAGTGCCGTTCAGCTCCAGAGACAGAAGGACTCTGGGGCTGCTGGTGAAGAGGCTGGAGAGGGGAGGAAAGGCCGAGCGCGAGGCTCTCTTTCAGGAAAACGACTGCATCGTGCGCATTAATAATGACGACCTGCGCAACATCCGATTCGAACAAGCACAGGACTTATTCAGGCAGGCCATGCGTTCCCCATTCATCCTGTTCCATGTGGTTCCAGCAGTGAGGAAAGTACAGTATGAGCAGTTTTCCCAGAGTGAGCTGGGTGTCCAGCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCCAAACAGCTACCCACTGACACTAAACCTGGTCCCGGTCCTAGCCGACTAACTCCTGAATCCAAACCTGGGGATAGGGGTAGTGTGGTGGTCGGAGGCATTGATTACAGTCCTAAAAGAATGTCTAAGAGTGGCCCTCATCCTAATGTTAATCACCAGACCCCGTCTTCCCAAATGGAGCAAAACCAACCTTATCCTGTATCAGCACCCATCATCAGTCCAGCCAGCAAGAGTACGACCTCCACAGGCTTCACCAAAAAGATTGGACGCAAGTTCAACGTCCAGCTCAGAAAAGGTCCAGAGGGACTTGGCTTCAGTATCACATCACGTGATGTCCCCATAGGAGGCTCCGCCCCAATCTACGTGAAGAACATCCTTCCTCGTGGAGCAGCCATCCAAGATGGCCACCTGAAAGCCGGTGACCGGCTGCTGGAGGTGAACGGGGTGGATCTGAACGGGAAATCTCAGGAGGAGGTGGTGTCTCTTCTCCGCTCCACTCCAATGGGAGGCACTGTTAGTCTGCTGGTCGTCCGCCAGGAGGATGCCTTCCTGCCTCGTGAAGTGAAAGCAGAGGATGATGACTTGGTGCTTACTCCCGATGGAACGCGGGAGTTCTTGACCTTTGAGATTCCTCTAAATGATTCAGGTTCGGCGGGGTTAGGGGTCAGCGTAAAGGGCAACCGCTCGAAAGAGAACCATGCCGATCTGGGCATCTTCGTTAAGTCCATCATCAACGGCGGAGCCGCTTGCAAGGATGGCCGCTTGAGGGTGAACGACCAGTTGATAGCTGTGAATGGAGAATCGCTGCTGGGAAAGACCAACCAGGAAGCAATGGAGACTCTACGCAAGTCCATGTCTATTGAGAGCAACAAAAGAGGCATGATCCAACTCATCGTGGCCAGGATGGTGAGCGGGAggaatgagCAGGACGGTGCAAGAAGTCCATCGGTGTCTGAGGTGTCACTGAACCGCTCTCATGAGGATCACGAGCGAcgcatctctcactctctgtacCCTGGAGCTGTCGAGGGCCTGGACGACCCAGTCAACACTCGCTCTATCATGGGCAGAATGATCGGTAACTACCAGCTGTCCCCCACTGTGAACATGCCTCAGGATGACACCGTCATCATTGAAGACGATAGGCCGCCtgttcttcctcctctcctgtctGACCAATCATCTTCCAGCTCCCATGATGACATGGGCTTTGTGCTAGAGCCACCTGTCTCCTGGGCCAAAGATATTCAGAATCAAGATGAAAGctcacTGAGTCCCGACACAGACCCTGATGGTGCATTTCAGAGGGAGGGCTTTGGCAGACAGAGCATGTCGGAGAAAAGAACCAAACAGTACGGAGACACTGCTCAACTCGAAATCATCAAGACACGCAAATCCAAGAGCATGGATTTAGTAGCTGACGAGATTAACCTCACACCCCGCCCAAACAGGACAGAAGGTAACTCCACAAGAGATGTAGGGCCCAATCTGGGCCTGAAGAAGTCCAGCTCTCTGGAGAGTCTCCAGACGGCCGTGGCAGAGGTGACGCTCAATGGGGACGTCCCCTTCCACAGGCCTCGTCCCAGAATCATCCGTGGACGTGGTTGCAATGAGAGCTTCCGCGCAGCTATCGACAAATCCTATGACAGACCTGGTATGAACGTGGTgggtgatgaagaggaggatgaaggcATGGAGACGTtggaGGAGGACACGGAGGAAAGCTCACGCTCCGGCCGTGACTCCGTCTCCACAGCGAATGACGTGGCCTTACTGGCTGGAGCGGCATACCAGGATGGCCAGTTGAACGGCGGACGGCCCAAAGATGAGCGCAAGAAGGAGAAAGGAgggaaggaaaagaaggaaaagagcaAAGCCAAGAAAAGCGTGCTGAAGGGCCTGGGTGACATGTTCAGGTTTGGCAAACACCGCAAAGACGAGAGAACAGGGGACAAGATGGAGCGCAAAGGCTCAAGCAAGAACAAAATGGATGACATGCAGGCCACAGAGGAGGAGATGCAGAGGATGcgtttggagagagagaggatCCAGGCCAAGACCAGGGAGCTGCGGGAGCGACAGGCCAGGGAGAGAGACTATGCTGAGATTCAAGATGTGACCCGAACCTTCAGCTCTGATGAGGAACACCCCTACGCAGGCATTGGCTCTCTCGACTCGTCCATGGACAGCAGCCAGAGCCTGAACCAGGAGCAGAGGCCACACAGTCCCAGAGATCAGGGCCTAGAGAGTCTTTACGCCCAAGTCAACAAGCCACGCAATGGAGTTCCACTATCTTCAGACAGacaGGCAATCGACAGGGTAGACCTGAACCTCTACAGGACTCAGGTGCAGGAGAGCAGACTAGAGCATGCTCAGCGTGCACTGAACTGACAGGTGCCATGCTGATTGAGATTTGGGGAGCGTAAAGCAAACCCTCACCACTGTGATACACACCTGCTTGATTgacggctgctcccattagagCTATATTCTCTAAGCTGCTGCTCTAAGccgagagagtgagggagagaaggagaaagagggagatatCTCTCGCTCCAGAGATTTTGGCTGTTGAAAACTGCTAAAAGAAGTTCACCTACAGAGATGCACAGCAAGgtgttttttccctctctctccctggcGCTCaacttcttttccttctctctcttctaaATCCACTTCCACCTGACTTTGCATGGTGCAGAAATTGGATTATAAGCCGCAGGTACCTTTCAGGTCATGGCTTTCATCTGTGTGTGAAGCTGTTTATGTTGTGGGTTTAGTTGCTGTtaggcagagagagaggagtgaagcAGTAATCCCTCAGATACAAACATACTTTATACATCTGCATTCGTTCCTCCCAGCTGCAGTGCTGATGTCAACATTACCAGTTGttctcatcatcaccatcatcatcatttctttTATTAGTGACATCATTGTTGTCATTGCCGTTGGCGTGGCCAAAACATGTGCAATGACAGTAAAGTCATGTCAGAACCATTATCGGCTATTCAATCCTCCATGTTCTCATCCGTCCAGTCTTCCTCCAGCTTCCCATTTgtccaatccatccatccaatcctTCATCCTTCAATCCCCAAtctttttttgaacatttcattGACCCAATCACATTTTATACCTCCCTTCATCCAGTCATCCCATCCATTAATTTGTCCTCCATAGTTTCATCCTCCACTTTTCCTTCATGCTCTCTCTATCCAATCCTCCATCATCCCATCTATCCAATTGTCTTCCATCGTCCATTTCACCCACTACTCCTCCATCCTCCCATTTCTCCAATCCTACTCCATCATCCCATCCATCCAAACCTTCTCCATCGTCCCAGCCATCCAGTCCTCTTCCATCTCCCTATCTGTCCATCCTCCTCCATagtctttctccttctctttatcCATCCATTCCAATCTATCCAATTCtcctcttttttcattcttataATTCACCCAAACTTTCATCTCCACTCATCATATATGGaaagtgtaaaatatgtaattaaatttgatttattattagcaaCAGAGAACTTTTTCCACATGAACATTGTTTTTCTCAGTTCCATTTTGCATAACCCTCAGTTTTCACAGATTAGTTTTTTCCCAATAAAATTACCACAGGCACATTGCATTATCTCTGTTTGCATTCTTTAATTAGCCCTGAATCAAAAGTTAATAGCAatagtgattttattattattttcttctcaaTTCAATTATGCCACCATTAAATCCGAGTGCATCTGGAGTGCTTTCTCTTAAATAGCATTTTGTTAATAATTCATTGGTGGATAGATGAGCATTTGAGATGgttacacacacttatagaGTGTGTTTATATGTCTATTTAATCTCCTTTCTCGTCAGGGGAATATGAGAAATTGTATAGGACTATATATATGCTGTGTGTCTACATGCACACGGTCTTAATGGCATTTGTGTAGATTAGGCTAATTGTAATAGCTCACTTCAGGGACAAATTAAGTGTCTGAGTGTATATtactcgctctctctttctctctcatttagATTTAGGTTAGTATGTCTGGGTATCATTACTGGGTTTTTGCCTAATAGAAGTTTTGGGCCCTGAATTTGCATCCTATATCGATAGTTTACTTACCGTTGTGGTTGGGGCGGTCCCCACCTCTGTACTTTTCCTGCCTGCTTTGCACTCTTTCTCTATCCATCTCCTGCCACTCTGGCTTGCTTGGTTTCTGGTGATGGGTTGGCTGGTTTTTAGCATCCTGTTGGTTTGCTGCTGGGTGTTTGGCCACACCTTCTGTGGTGTCAAGTTTGCtgattatgtacattttttgaaGCACCTACTTGCTCGTTGCAATACTTTCGAGATGCTGATGGGCATGCTACCATGGCTTGAGGCATTTTGCTGCCACTTTAAACAAGCACATGATTTTTTGTGAGAGCTCCTTGATGCCTCTGGTGCTGAATGTGCTCCTACAAGGACAACCTGACTTTTCAGTACATTACTGTTCCCTAGTTTTTGgacaagtaataataataatcccttATAATAATTGTCTTGATTTACTGAATTGTCTTCTTTtgtcatataatttgcatttgtgttttgctgtttttatttttagtatgttATTGTGCTTGTTTATACCTTCTTTTCTGTCCTTTGTTGCAGTATGTTCTCTCGATTGATTTTCTAAAGTAACCTTGAGCTTGAGCTTGGGAAAtgtgctacataaataaaatgttaaaacatgtaaatatttaaaaatgtaaatggttTCATAGTTTCTCATATTTTATGATAAAGGTGTTAAATAATCCTTTGTGCATTCCAGATTCATTTCATAGCTTTCTGTAAAGTTTCTCAGTAAGAACAAAGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17816 lncRNA downstream 1918 26104667 ~ 26109833 (-) True G15012
TU17264 lncRNA downstream 269793 25841122 ~ 25841958 (-) True G14506
TU17275 lncRNA downstream 274114 25835004 ~ 25837637 (-) True G14515
TU17274 lncRNA downstream 288116 25821749 ~ 25823635 (-) True G14514
TU17272 lncRNA downstream 347987 25758074 ~ 25763764 (-) True fxyd7
TU17986 lncRNA upstream 27613 26446652 ~ 26446940 (-) True G15174
XR_004578627.1 lncRNA upstream 29617 26448656 ~ 26452315 (-) True LOC117597861
TU18132 lncRNA upstream 314323 26733362 ~ 26782469 (-) True G15313
TU18162 lncRNA upstream 334702 26753741 ~ 26754050 (-) False f13a1a.1
TU18178 lncRNA upstream 404196 26823235 ~ 26836478 (-) True LOC117598133
XM_026944720.2 mRNA downstream 270808 25772592 ~ 25840943 (-) False nrp1a
XM_026944719.2 mRNA downstream 270808 25772592 ~ 25840943 (-) True nrp1a
XM_034309064.1 mRNA downstream 347057 25758055 ~ 25764694 (-) False fxyd7
XM_034308013.1 mRNA upstream 6345 26425384 ~ 26444247 (-) False cul2
XM_034308008.1 mRNA upstream 6619 26425658 ~ 26446101 (-) False cul2
XM_034308010.1 mRNA upstream 6619 26425658 ~ 26446101 (-) True cul2
XM_026944759.2 mRNA upstream 72021 26491060 ~ 26512794 (-) False LOC113545420
XM_026944755.2 mRNA upstream 72021 26491060 ~ 26512794 (-) True LOC113545420
XR_004578410.1 other downstream 522048 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 522048 25547057 ~ 25589703 (-) False cadm4
TU16925 other downstream 707445 25400756 ~ 25404306 (-) False G14258
XR_004578761.1 other upstream 47772 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 1826303 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 1826851 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 1832017 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 1836456 28255495 ~ 28255567 (-) True trnar-ccu_2

Expression Profile