RNA id: XM_026947966.2


Basic Information

Item Value
RNA id XM_026947966.2
length 3274
RNA type mRNA
GC content 0.47
exon number 6
gene id ntng1a
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 31166426 ~ 31312036 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttttaattagtcagCTCGTTTCAGGTCGGTTGGAGGGAGGGGGGTGTTGGTTGGTCATCAACTTTAGGGTGATGCCTcccctgcatgtgtgtgtgcgcgtgttttcggagtgtgtgtttttcccccctCGACCTCCTCGCGCTGAGCTTTAACAGAGCAGCCTGCGCCTTCTTTCCTTCAACTTGTTGCACtctttattatcatcatcatcatcatcatcattgttatTCATGATAATATTTAACCCAGAGGAGATCCTGCAAAGATCGCAATAATAACGAcggacaggaagaggaggatgattGACAGAAAGCAAAGCTGAGACGGCTGTCCATCAAAAGTATCAGCCCACAGAAGACGACTCATATCAGAcgtctccctcgctctctctcactctgtttatcgCCCTCGGTCCTCCCTGCGGATCCGTATAAAGAGAGTGCGTAGACGAAGCTGGCATGTTCCCTCACCTTTGGCACCCTCTGCTTGCTAAAACTCGGATTATTTCATAAACTTGGCCCTCTgaacacaccttcacacactctctcacacactccttatTTGCTTGATCTGTCCATCCGCGCTCAGGCAGCCATGCGTGTGTGGTTGATGGTGACCCTCCAGGCGGCCTGGCCGTGTTTTTTCGGACTGGCCATGCAGCACTACCCCACCACGTGGGGCCACTACGACATGTGCAAGTCGCAGGTTTACACGGACGATGGACTCACCTGGGATTACATGGCCTGCCAGCCCGAGGCTGCCGACATGACCCAGTACCTGAAGGTGACACTTGACCCTCCAGACATCACCTGCGGAGACCCGCCCGAGACCTACTGCGCCCTGGAAAACCCATACATGTGCAACAACGAGTGTGACGCGGCGACAGAGGAGCTTGCCCACCCTCCAGAACTCATGTTTGACTTCGAGGGTCGCAACCCCACCACTTTCTGGCAGTCCAGTTCTTGGAGGAAGTACCCTAAACCCTTGGCAGTGAACATCACACTATCCTGGAACAAGACCATCGAACTGACGGACGACATCGTCATCACGTTTGAGTCAGGCCGTCCTGAGCAGATGGTGCTTGAAAAGTCACTGGATTATGGGAAGACATGGCAGCCATACCAGTTCTATGCCACTGACTGCTTGGACGCCTTCACCATGGAGCCAAAGACGGTGCAGGACCTGTCCCAGTTCACGCTGCTGGACATCATCTGCACAGAGGAGTATTCACGTGGCTATGTCTGGAAGTATGACAAGACTGTGCGCTTTGAGATCAAGGACCGCTTCGCCCTGTTTGCTGGACCACGTCTCCACAACATGGCGTCCTTATATGGCCAACTGGACACCACGAAGAACCTACGAGACTTCTTTACCATCACAGACCTGCGCATCCGGCTCCTCCGACCCGCCACTGGGGCCACCATGGTGGATGAGGGCAACCTGTCCAGATACTTCTATGCTATCTCTGACATCAAGGTGCATGGCAGGTGTAAGTGTAACCTGCATGCGAACAGCTGTGTGTTTGATAAGGAGAAGCTGAGCTGTGAGTGTGAGCACAACACCACGGGGCCCGACTGCGGACGCTGCAAGAGGAACTACCAGGGCCGAGCCTGGAGCGCCGGGAGCTACCTGCCTATACCTAAAGGCACGGCTAATATCtGTGTGCCGAATAACGTGGGGCCAGTGACCCGAGTGTGTGATGACGAGCTGCTTCGCTGCCAGAacggcggtgtgtgtgtgaacaacgTGAGGTGTCAGTGTGCCCCGGGATACTCGGGCCTGCTGTGTGAGAAGGTTCGCTGCGACAGTGAAGCCGGCTGCGGCTCGTCTGATTCGGCTCAGACTTCCATCCCGTCCTCCATCAtcatcctgctgctgctgctgctgcgttCAGCCTGGGCTTTAACCctctgagaaacacacacacacacacacacacacaaaaacacacacatgcaatacaCATGGCTTTTACAGTACAAGCAAACTCctgtacacatatacatatacatacacacacacacacacacacacacacacacacacacacacacacacaatacaaaatacacaatacatataAAAGGCTGATCATCAGAAATCAGAGCGAAACCCTAATTTGAgaggacaataaataaatatataaatatatgtatacaaaatttaaaaatattacaaatctATAAAAATTAAAGAGTCACGAGATGTTATTTAGAAAATTTATCCAAGCATTGCTTCATAAAGGCGTCAGCGTGAAGGAGTATGGTGGACTAAGCCATAGCAGAAACTCAAACTCgcccctcctcctcttcctcctcctcctcttcctcttcctcctcctccgccAGCCTACACCTCCCCACCAAgagcaaacaggaagtggatcTTGCTACTTCCTCTTTATCGCCACGGTAACTTGGGATCAAGATGGCGAACGCCTGCAACTTTGGACAACTTTGGACTGCTTTTGGGCTTTCCTCACACGGAGAATGTGTCCAGATCACGTGGACTATTtacaaaattgtaaaaaataaaatcgaataaaaataaataaagactcaTGAGAAGAAAAATCATAAACATTCTTTGCTGTCAGTGCATTGTGGAGATCAGACTGAGCTGCGTTTAAAGGAAGTCCATCCATTTCCACTCGTATTTGGTGAAAAAGCCTCGACGatcactttttcccccatttctgtttttttttttgttgttgtttttattattattttatcgtCCGATGTCAGAGTCAGTGCAGCACTTGTGTATTAGCTGtccccaaaatataaataaacccaTGAAGAAGTGCTTAAAAAATCATCAgcgtatttaattttttgtatttacaaagatttattttctttacaacAAATAGGACAGagtttttgtattattattattattattattattattattattattattactcatatTACTGATAAACTGTGTTTAAGAGCGATGTGTTAAGTATGTTAAagaaacatgaaatgaaaagatGGATGATTAAACTTTTAAGTTTTAGGGGCCCAAGCACCGAGAGCCATGACATATTTTTGATCTCAATCAGGTCAGTTGAATGTACTCAAAGAGCGGCTGCGTTAAAATGCCAAGGATCGGTTGCACCAACAGGATATGAAGTAAGCAGCTGTATGATGCTGTATGATGTTTGTCCCCAtctcacatcgtaaaaaaaaattctttggttGCGAGTTGAGATCCGTGTCTCAGAACGCATATTGTGACgtgctcatgttttttttttggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20352 lncRNA downstream 55 31165011 ~ 31166371 (-) True G17285
TU20331 lncRNA downstream 36275 31126733 ~ 31130151 (-) False G17277
TU20335 lncRNA downstream 36275 31126733 ~ 31130151 (-) False G17277
TU20336 lncRNA downstream 36275 31126733 ~ 31130151 (-) False G17277
TU20337 lncRNA downstream 36275 31126733 ~ 31130151 (-) False G17277
TU20405 lncRNA upstream 366 31312402 ~ 31312656 (-) True G17338
TU20425 lncRNA upstream 50194 31362230 ~ 31362461 (-) True G17347
XR_004578747.1 lncRNA upstream 101721 31413757 ~ 31450541 (-) True LOC117598001
TU20479 lncRNA upstream 272705 31584741 ~ 31587833 (-) False rnpc3
TU20509 lncRNA upstream 328115 31640151 ~ 31700439 (-) True G17408
XM_034308978.1 mRNA downstream 151777 30988294 ~ 31014649 (-) True telo2
XM_026947949.2 mRNA downstream 183511 30970017 ~ 30982915 (-) True LOC113547558
XM_026944717.2 mRNA downstream 579736 30582017 ~ 30586690 (-) True xrcc2
XM_034305552.1 mRNA downstream 604515 30400155 ~ 30561911 (-) False kmt2ca
XM_026947947.2 mRNA upstream 13878 31325914 ~ 31327457 (-) True prmt6
XM_034308814.1 mRNA upstream 275182 31587218 ~ 31611972 (-) True rnpc3
XM_034304521.1 mRNA upstream 620433 31932469 ~ 31991048 (-) False arhgap29a
XM_034304520.1 mRNA upstream 620433 31932469 ~ 31991048 (-) True arhgap29a
XM_034304523.1 mRNA upstream 620433 31932469 ~ 31958676 (-) False arhgap29a
TU20251 other downstream 163117 31002409 ~ 31003309 (-) True G17199
TU20271 other downstream 169257 30993069 ~ 30997169 (-) False telo2
TU20272 other downstream 170192 30993069 ~ 30996234 (-) False telo2
LOC117595698 other downstream 377016 30785963 ~ 30789410 (-) True LOC117595698
TU19913 other downstream 523452 30640698 ~ 30642974 (-) True G16900
TU20760 other upstream 688589 32000625 ~ 32052554 (-) True G17630
trnar-ccg other upstream 707059 32019095 ~ 32019167 (-) True trnar-ccg
trnar-ccg_1 other upstream 766507 32078543 ~ 32078615 (-) True trnar-ccg_1
trnar-ucg other upstream 773693 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_2 other upstream 774441 32086477 ~ 32086549 (-) True trnar-ccg_2

Expression Profile