RNA id: XM_034304197.1


Basic Information

Item Value
RNA id XM_034304197.1
length 1599
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC113542546
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22860265 ~ 22872115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATTGAAAGGttggagggagagaaaggagaagacAGAAGAAGGAGTGTTGGTAGTTTGAGAGAGAATGTGGAAGCTTAAAGGACAGCACCGAGCTCAGGATGCCAGGATGCGCGGGACAGAGGGAGCCTACATACGTTGTTCATGTTTCTCCCTCTTTTAGCTTCTTGTTATGGACATTGTGTCTAATTGGAAATTTGACAATTCTAAGAATCAGTTAAACAGTGCAATTCTGAGACTTGGGTTCTAAGAAGGAGTGACAATAGCTTTTTTTCATGCAGCAGTGAAAAGAAGAGGGAAGTGGCTGTGTTGTGATAATGGTGTGTTAGTATAAAAGTGTGATGAGGAAGTGTGATGCAATCAAGACATGGGATGAGCGTAAACTGGGCTTAGGCATTTGTGAATTTCTCTGACAGTGATTCTCCTGTTTCAACTGAAGTAAACACATCCTTATTCTTATAATTCCTAATATTGACTAACATTGTTCTTGTACATGGAATTAGTCTGAGCATATGAGGACAAGACTGTTACAGTAGTTACGTCTCTTCCATTACACACTGGGGGTTTGGTCAAGAAAACGAAGCAAGATCAGCACAGAAAGTGAGAGACCATGGACGCAGAAAAATTGAGTGAGGTGGAGATGAAAGAGCTTACTCCAGCAGAAGTACAAGATGATAAGGatgcagagaaagacaaaatgGAAGGAACAAAagAAGCTGAGAAAAAAGCTGAAGAAGcagaagcaaaaaacaaaaaagaagaggcTAATGTGTACTGCAAACTGAAGACTCCATCAGAAAATTTTTATAGTGTTTCAATGCATACTTCCTCTCCAAAATGCAGTGAAGgtcaagaaaaagaaaaagcacaagAAGACGAAGAAGCTAATTTGTACTGCAAACTGAAGGCTTCATCAGAAAACGTTTATATGTCTACGATGACCAGTTCCACTCCAAAACACAATAAAGATGTTTACAGGAGAGTTTGCCTGTACAAGAGGATTTCTGCTGTTTTCACCATTCTCTCTGTGCTCTTACTGGCTGTGGTTTTGGCTCTGGCTATGAAGTTATATGAAGTTCAGTCCATCCAGAAGTGTCCAGAGCTCTCTGCTGAAGTGGAGAATAAGCACAATTACCCCTCAAACCAAGGGTATCAGTGCTCTGAGTGTGGGAAGGGCTGGGTGAGGTTTAACAACTCCTGCTTCTTCATATCTAAGGAGCGTCTAAGCTGGCAGGAGAGCAGAGAGGCGTGTCAGAAACAGGGTGGAGACCTGGTTGTCATCAGAAATGAATATGTGCAGAAAACTCTAACTAAGTATTGGGGCATGCTGTACTGGATCGGGCTCCGTTATTCAGAAAAGCAGCAGTGGATGTGGGTTAACAATACTGCACTAACCAAGAGcTACTGGGCCCAAGGCCAGCCAGAGTCAGACTCTCAAGGCTCCTGTGCACTGCTAAGAGGACGGGGGTCACCCACAAACAACTGGCATTCAAACCCCTGTGTGGTGTCCTCAAATTACATCTGCCAGAGAGGTTAAAAGTGGAGAATGATCAACCATCACCATCACATACATCTGCTACATTTGCCTTTAATATCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15180 lncRNA downstream 30394 22825000 ~ 22829871 (-) True G12797
TU15019 lncRNA downstream 103651 22754738 ~ 22756614 (-) True G12657
TU15016 lncRNA downstream 106324 22749613 ~ 22753941 (-) False G12656
TU15200 lncRNA upstream 47171 22919285 ~ 22928564 (-) True G12816
TU15203 lncRNA upstream 66112 22938226 ~ 22938796 (-) True G12819
TU15307 lncRNA upstream 248496 23120610 ~ 23121495 (-) False LOC113542417
TU15311 lncRNA upstream 259161 23131275 ~ 23131498 (-) True G12917
TU15401 lncRNA upstream 260812 23132926 ~ 23165584 (-) True cxcr3.2
XM_026939992.2 mRNA downstream 114200 22731675 ~ 22746065 (-) True rasip1
XM_026940182.2 mRNA downstream 150892 22704222 ~ 22709373 (-) True il11a
XM_026940104.2 mRNA downstream 157590 22695703 ~ 22702675 (-) True znf628
XM_026940004.2 mRNA downstream 164736 22693318 ~ 22695529 (-) True nat14
XM_034304251.1 mRNA downstream 172016 22686407 ~ 22688249 (-) False aicda
XM_026940145.2 mRNA upstream 3573 22875687 ~ 22885619 (-) True LOC113542545
XM_026940144.2 mRNA upstream 3573 22875687 ~ 22885614 (-) False LOC113542545
XM_026940149.2 mRNA upstream 15080 22887194 ~ 22892627 (-) True LOC113542547
XM_026940272.2 mRNA upstream 30120 22902234 ~ 22908140 (-) False zgc:92606
XM_026940066.2 mRNA upstream 53439 22925553 ~ 22931345 (-) True tpi1b
XR_004578404.1 other downstream 1584924 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 3036582 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 3113382 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 3114325 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 3157105 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 29237 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 29237 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 1364178 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1519416 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1663746 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile