RNA id: XM_034304697.1


Basic Information

Item Value
RNA id XM_034304697.1
length 2299
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC117595702
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33514495 ~ 33527798 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttaaagaaaaacaagagtctgattcagggtgagagatcagactcacctgaacccagctgtgtgtccatgaagagtgactgGTCAATGGACCATCTAATAGACTTCAGAGACACAGACTGTGCTACTGATCTGAGATTGCTCCCTTCTGTGCCTCAGGCCAGTGAGGACTAAGAGATCAGACTctccagaacccagctgtgtgtccaggAAGAGTGAAGAGTCAATGGAGCATCCAAAAatttcagagacagagactgtaCTACTGATCTGAGATCACAAGAGCatgaaacaaaaatcatttcCAGGAATAATCTGGAGCCCACactcaagGAGCTGGGAGACAACGAGCAGATGAGATCCGAGAACATCCTGAGTCCAGACTCTCCATACCAGCAAAAACTCAAATCCAtactgagagagaaaagtaaaagaattaatgaaggaatctcacagcatggaagctcagcacttctgaatgagatctacacagatctctacatcacagagggttggagtggagacgtcaataatgaacatgaggtgagacagattgagacagcgtccaggagaccagcaacacaggagacacccatcaaatgtaatgagctctttaaagacaagtccatcagaagtgtgctgactaaaggagttgctggaattggaaaaacagtctctgtgcagaagttccttctggactgggctgaaggaaaagcaaatcaggacatcaccttcatgtttccacttccctttagagagctgaatttgttgaagcagaaaaatctcagtctgatgaatcttcttcatcactttttcccagaaataaaagaattacaattaatagactgtaATTTTCACAAAGTGATATTCATCTTTGATGgactggatgagtgtcgacttcctctaaatttccagaacaatgagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagtgtgtagaccaggtaacagaggtacgagggttcagtgatcctcagaaagaggagtacttcaggaagaggatcagtgctCAGAGCCTGGCCactaaaatcatcacacacatgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatttTGGGAGAAGCAGAGaatggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacacaaggaccaaaagttccatcagaaatgtgaccctgatcctcagcagaccagagagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggagtgtgtacccaaatcttcagagaggagtttgagCTTCAcatggggaaggtgttcagctttgtacatctgagtgttcaggagtttctggctgctttatatgcacTTGTCTCCAGTatcaacaaaaatattgcaaaacaacaaatcactgatctgtctgatcttttcaacaagtcaaacatgtctgatttcctgaaGAGTGCAGTGGACagggccttacagagtgagaatggacacctggaccttttcctccgcttccttctgggtctctcactggagtccaatcagactctcttacgagacCTGATGccccagacaggaagcagctctcacagcaaacagaaaacagtcgagtacatcaaggagaagatcagggagaatccatctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctttAGTACAGGAAGTACAGACTTATGTGAATACTATATATTTTAGTTGTCTCGATGGAGCCAatttctctcctgctcagtggtcagctttggtgtttgtgttgctgaactcagaaGAATCTTTGGATGTGTTTAATTTGAGGAAATATCACCGATCAGATGAATGTCTTCTAAGATTGCTGCCAGTGGTTAAAGCATCTAGAAAAGCTGCgctgtatGACTGTAATCTGACaggggaaagctgtagagctctgtcctGCAGAGCCTTTTTGATCTGTCTCTGCACTTGGCTCCATTCCACGCCATATATTGTCCTCCTGGACAAGCGGGCCCTGCACGACGCTCTTGAACATCCTATCGCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578366.1 lncRNA downstream 17044 33493740 ~ 33497451 (-) True LOC113524631
XR_004578370.1 lncRNA downstream 26281 33486894 ~ 33488214 (-) True LOC117597603
TU21699 lncRNA downstream 32670 33475421 ~ 33481825 (-) True G18425
TU21697 lncRNA downstream 63575 33449578 ~ 33450920 (-) True G18423
TU21692 lncRNA downstream 72275 33441675 ~ 33442220 (-) True G18418
TU21720 lncRNA upstream 87596 33615394 ~ 33616366 (-) False dnah3
TU21728 lncRNA upstream 191145 33718943 ~ 33719150 (-) True G18446
TU22264 lncRNA upstream 329910 33857708 ~ 33858166 (-) True G18794
TU22266 lncRNA upstream 332140 33859938 ~ 33860410 (-) True G18796
TU22269 lncRNA upstream 334404 33862202 ~ 33952846 (-) True G18799
XM_034304692.1 mRNA downstream 7508 33499284 ~ 33506987 (-) True LOC117595708
XM_034305482.1 mRNA downstream 42228 33461778 ~ 33472267 (-) True LOC113524648
XM_034305506.1 mRNA downstream 61106 33428924 ~ 33453389 (-) True LOC117597600
XM_026946418.1 mRNA downstream 187942 33319864 ~ 33326553 (-) True fgf21
XM_026946458.2 mRNA downstream 230078 33250847 ~ 33284417 (-) False mybpc2b
XM_026910980.2 mRNA upstream 3744 33531542 ~ 33546245 (-) True LOC113524637
XM_026910981.2 mRNA upstream 3744 33531542 ~ 33546215 (-) False LOC113524637
XM_026910975.2 mRNA upstream 21489 33549287 ~ 33567633 (-) True LOC113524634
XM_034304702.1 mRNA upstream 44955 33572753 ~ 33616199 (-) True dnah3
XM_026910979.2 mRNA upstream 102240 33630038 ~ 33643243 (-) True kcnj12a
TU21290 other downstream 917690 32589902 ~ 32596805 (-) True G18097
trnar-ccg_3 other downstream 1306798 32207625 ~ 32207697 (-) True trnar-ccg_3
trnar-ccg_2 other downstream 1427946 32086477 ~ 32086549 (-) True trnar-ccg_2
trnar-ucg other downstream 1428694 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_1 other downstream 1435880 32078543 ~ 32078615 (-) True trnar-ccg_1
TU21711 other upstream 43581 33571379 ~ 33571830 (-) True G18432
TU22331 other upstream 487250 34015048 ~ 34016030 (-) False G18848
TU22333 other upstream 487250 34015048 ~ 34037333 (-) False G18848
TU22337 other upstream 487250 34015048 ~ 34037333 (-) True G18848
TU22338 other upstream 487250 34015048 ~ 34016030 (-) False G18848

Expression Profile