RNA id: XM_034304845.1


Basic Information

Item Value
RNA id XM_034304845.1
length 4016
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC113547549
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32562537 ~ 32575431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGAGCAAAGACATCAACCTCTGTGCTCCATGTCTGCTTCAAATAGAACCTCACGTACCAAATCTTCTACGGTGCGTTCTTCTGCTGGTGACACGGTCACTCTACGCTGTAAACTCTCTCCTGAACTCAGTGGAGTTACCAGAGAGATCAGGTGGTTTAAGGGGACAGAATGTGTTCACCAGCAGGCCTatgaggacagagagacagccgGGTGTGTGAGGATGAGCTTTGGGAGAAACGTGTCTCTGAAACTGAGAGATGTTAAAGTCAGGGATTCTGGACAGTACAGGTGTGAAGCTCACGGAGAGAGGAAAGAAGTGGTCACGGTTGTTGATCTGCACGTTGCAGGGTTTAAACTGGTCTCCAGATCTGATGATTTTGAGCTGGAGCGTTTTATTGGTGATGATGTCACTCTGCCCTGTCACCTGTCTCCTAAAATGAGTGCTGCTGCCATGGAGATCAGATGGTTTAAGGGAACAGACTGTATTTGTCTGTATCAGAATGGACAGGTGAAAGAGGGGAAGGGCTATGAGGGCAGAGTGAGTCTGTTCACCCACAAGCTGAAGAAAGGAAATGTGTCTCTGATGCTGAGGAGAGTTCACGCTTCGGATAGTGGAAGCTACAAGTGTGCAGTTACCCACGGAAGAGACAAGgtggaaaatgatcaaattgACCTGCGTGTGTCAGAATTCAAGCTGGTCCACAGatctgaagatgttggaaagcCGTCTGGAACAGAGTATGGAGCTCATAGGGTGATtgctgatgatggtggtgaCGTCATTCTGCCCTGTTACCTCTCTCCCAAAAAGAatgctgttgccatggagatcAGGTGGTTTAAGGGAGCAGACTGTATTTGTCTGTATCAGAATGGGCAGGTGAAAGAGGGAAAAGGCTACAAAGGCAGAGTGAGTCTGTTCACCCACAAGCTGAAGGAAGGAAATGTGTCTCTGATGCTGAGGAAAGTTCAGGAGTCAGGAGATGAGGGACAGTACAAGTGTGAAGTCATGTGTGGAGATGCAAAGGTGGAAAAGTCAATTTACCTTTACTTTCCTGGTAAAGGTAAGGCCTACAAATTTTTACTTTCGCCTGTTATactatacacactcactgtcgAGAAtgacttcttttatttatatacaaatgtTTAATAGACAGATTTATAGTCATATGATTGGCCACAGTCTTTTAGAATGACCTTCATATATCATCATGCActttaataaatggattaattgTAACCAGATTCTGCAAAACCCCTATTTTAGTAACAAATGTACTCACACGCtgcaaaacacatgaaaatatctcgaatatagtcagatttatctagtgTAAGATTACAAGTCCTAGtgtaagattacaataaaccaaatataaaattattaaaactataactgacatttttattcatttcaagcttggAATTGTCCTATTCttttggcagatcattttgcaaGTGTGatacaaactaacataattaatATGATCCGTTATGTGAtcttttgatatatatatatttatatatatatgtatttttattttagtcatgTCACTCCTACACAGTGAACTAAATCAAGACACAAGTTTAGATTAATATATTTAGGAAGAGaagtcttatttatttcttatcaTCTATTCCAAGCAATTACGAATGtaactttctcttcttttctccttttttataGACTATGGTACGtattatatatatctttttattttcagaacatACGTGAATCACACAACTACTTTAACTTGTATAGGAAGGCTTTATAGTGTCATGATCATCTATTCCAAGCAATTACGAATGtaactttctcttcttttctccttttttgtaGGCTATGCAGGACTCCCACGTGCTTCAATATCTAGACGGTATTCAAGGAGAAAACCAAGAGATGACGAACACACACCTGgaaaacCAGGAAGACGATGGAGTAATCCGTTAGAGGTTCCAACTAtgtgaaGACAGAGCTCAAGAGAGAGTAACagcaggacagaggacagagaaAAGAAGACGGTCACAGTAAAGGACATTAGAGAGCATTTACACAGCAAAGAGAAATGAACATTCTGTTCTATATATTACTGATTTGTTTAATGTACATAAGGCTGCTTTCCCACGTGGCCTTTTCTTTTTAGAAAGAAATCTCTGGCCAGAGCTGACACAATGCTCACACTGTCAAGTTCGGCGAGTGGGGACACAGGCAAGTGCAGTAAAAAGTGTTTATTgaagagaggcaggcagacaaattcAAATCTGCAggcagaatcagaatcagtaaGCAGGCTAAGGTCAGGCGATCTACAAACAGGACAAAACTAGGCAAGGCCTAATAACAAAGGTACACGCATGAGACAGTGTCAAACCAGgtaaacagacacagaaaacAGTCTTGGTAccatcaggtgctgaggaaaaACTGAGCGTTTACTTCACACAGGAAAAATACACGCAGGAGTTTAAACATACAAACTAATCAAAGGGCAAATGGAGACAGGTGCGAGCAATAAGGACACATGAGGGAcacaaccaatgacaggacatggGTGGAGacataaaccaaaacaaaacacatggcaaagtaaacaaaacatgacaacaCAGACGAACCGCTGCTTATGCGCACTGAACGCTCCTGCACACAGAGCTCGGCATGAGGGGGAAATTCCTGACACACTGCAACCATAACACTCTTaccagtcctagctagtatcagctaactaactagcctagcttacTCTCTAGATTAGAGTTATTATTGTGagtaatgcagatgaaatacagattggtgtaactctggtgatgaggagaTTGTTTGTCTTTGTTGTAGATCTTGGAGGCAGAAAATGgagagaatttgagctgcttgtgtgatGTGACTGTGTGCAGCTACAGTTAAAGAGGGACGTAACATCATGTAGTGGTCAATGTCCAAGGTCAATATTTTCCACTCAGCATGTTGTAACATGTCTCCTCATATTGACTCACTAACCAGACTCGCTTTTCACCAGGACTTTGtcctccatatttttttttttgcttgccctctgattggtcagctcaGTGCTTTTATGAAAAGTCTAAGTAAAATCTCCTGAATTCCACCTGCCCTGCCTCCACTTCCTGTAGGATTACAGGTATAATGTCTGCTGgagattaagaaaaaaaaaaaaaaaagtgtgaaagcagctgAAGTATTAATATGTACTGTAGTCTGTGCTCTTCTGAGAGCAATTGAACATCattagctacgtttacatgcagtCTAATAATCTGAAAATAATCTGACTGTGAGCTGAATCAGAATGAGAACATTCATGTAAACACTTCAATCAGAACAGAGTAAAGTGTTTGCTAAACTCTCTATCTGCTTGAACAAGATGACTAATGCTTTTAATCATCTGTTAAATAGCAGAATAAGAGCTGTGTCAAAATGTGTGTCTGatttctttcactttcagaatgtgtgtgtgagtgtgtgagtcacAACATGCTCCTGGGGCTGTCAAAAGTAGTGTAAGAAACCACTGCTCATGCTACAGAGTAATGGCGTTACATATCTGTATACTGAAGGATAATGTTcgtgttttatattattttccaaAGTGTCCTTGCTCCTGAATCTCAGGCAAATATGAAATCCTGATAAACTTTACTGCGCTCACAAACTCTTCCTCTGGCTCTCTGTTTAATAATCATGTTTGGATGATGTTTTCTGAGACAGATATTATTTAAAACTCGTTATAAAAGAGTGTGATTAAAAAGCTGATACTAATtgatacacacatgcacataacCCCGGATGAGGTTATATGTaacatgcacataaacacaggTTTTATAAAAACGTCTGATCCATATAAACAGTTACTTTTAATTACATTCAGATTAGTGAAAATTATAACCACtgcaaacattttctgtaagtgATCTAATTTACTGTTGTGTTGATAAGCATTGCTGCTTATGTTTATGTggtttttgtattgtattgtgttcGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578529.1 lncRNA downstream 204783 32355196 ~ 32357754 (-) True LOC117597779
TU20998 lncRNA downstream 208463 32353860 ~ 32354074 (-) True G17850
TU20762 lncRNA downstream 464759 32053783 ~ 32097778 (-) True G17631
TU20608 lncRNA downstream 663781 31898557 ~ 31898756 (-) True G17498
TU20551 lncRNA downstream 743900 31818258 ~ 31818637 (-) True G17441
TU21339 lncRNA upstream 65924 32641355 ~ 32645315 (-) True G18133
TU21342 lncRNA upstream 74793 32650224 ~ 32650785 (-) True G18136
TU21313 lncRNA upstream 109086 32684517 ~ 32729038 (-) True G18110
TU21352 lncRNA upstream 132025 32707456 ~ 32708126 (-) True G18143
TU21353 lncRNA upstream 135270 32710701 ~ 32710972 (-) True G18144
XM_026947939.2 mRNA downstream 23190 32521620 ~ 32539347 (-) True LOC113547553
XM_034306549.1 mRNA downstream 316926 32238940 ~ 32245611 (-) True enkur
XM_026947943.2 mRNA downstream 324724 32219895 ~ 32237813 (-) True prtfdc1a
XM_034300539.1 mRNA downstream 325103 32219895 ~ 32237434 (-) False prtfdc1a
XM_026947923.2 mRNA downstream 375044 32115502 ~ 32187493 (-) True LOC113547543
XM_026947934.2 mRNA upstream 34588 32610019 ~ 32622734 (-) True tmem204
XM_034304830.1 mRNA upstream 112166 32687597 ~ 32696711 (-) True fam234a
XM_034304834.1 mRNA upstream 301039 32876470 ~ 32895850 (-) False ccdc78
XM_026909777.2 mRNA upstream 301039 32876470 ~ 32895850 (-) True ccdc78
XM_034304677.1 mRNA upstream 324438 32899869 ~ 32918570 (-) True LOC113523757
trnar-ccg_3 other downstream 354840 32207625 ~ 32207697 (-) True trnar-ccg_3
trnar-ccg_2 other downstream 475988 32086477 ~ 32086549 (-) True trnar-ccg_2
trnar-ucg other downstream 476736 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_1 other downstream 483922 32078543 ~ 32078615 (-) True trnar-ccg_1
trnar-ccg other downstream 543370 32019095 ~ 32019167 (-) True trnar-ccg
TU21290 other upstream 14471 32589902 ~ 32596805 (-) True G18097
TU21711 other upstream 995948 33571379 ~ 33571830 (-) True G18432
TU22331 other upstream 1439617 34015048 ~ 34016030 (-) False G18848
TU22333 other upstream 1439617 34015048 ~ 34037333 (-) False G18848
TU22337 other upstream 1439617 34015048 ~ 34037333 (-) True G18848

Expression Profile