RNA id: XM_034305482.1


Basic Information

Item Value
RNA id XM_034305482.1
length 2784
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC113524648
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33461778 ~ 33472267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaacatgaaccacacagatctcgctaacacactgcagaaaaAACTCGTCTCTACACACCAGCAaaaactcaaactcaaactgagagagaaatgtaaaagaattaatgaaggaatctcacagcatggaagctcagcacttctgaatgagatctacacagagctctacatcacagagggtgggagtggagacgtcaataatgaacatgaggtgagacagattgagacagcgtccaggagaccagcaacacaggagacacccatcaaatgtaatcagctctttaaagacaagttcatcagaagtgtgctgactaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaatgCAAATCAGGACatcaccttcatgtttccacttccctttagggagctgaatctgatgaagcagaaaaatctcagtctgatgaatcttcttcatcactttttcccaaaaataaaagaattagagttaatagactgtaatgttcacaaagtgatattcgtctttgatggtctggatgagtgtcgacttcctctaaatttccagagcAATAGGAGATTGTGTGacgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagtgtgtaaaccaggtaacagaggtacgaggcttcagtgatcctcagaaagaggagtacttcaggaagaggatcagtgatcagagcctggccaataaaatcatcacacacatgaagtcttcgaGAAGTCtttacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacatacttcctgatctttcagatcaaacacaaggaccaaaagtaccttcagaaatgtgaccctgatcctcaccagaccagagagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggagtgtgtacccaaatcttcagagaggagtttgggcttcacctggggaaggtgttcagttttgtacatctgagtgttcaggagtttctagctgctttatacacatttctctccttcatgagcagaaatgtaacagaacaacaaaccactgatctgtctgatcttttcgGCAAGTccaacatgtctgatttcctcaggagtgcagtggacaaggccttacagagtgagaatggacacctggacctgttcctccgcttccttctgggtctctctctggagtccaatcagactctcttacgagacCTAATGccccagacaggaagcagctctcacagcaaacaggaaacagtcgagtacatcaaggagaagatcagggagaatccatctccagagaaaaccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtccAGGAAGTACAGCATTACCTGAAAAGCAGTGATTCCTGGTGTCTCAGTGGAGtcagtctctctcctgctcagtggtcagctctggtgtttgtgttgctgaactcagaTGAGAATCTGGATGTGTTTGATTTGAAGAAATATCAGATGTCAGATGAATGTCTTATGAGGTTGATGCCAGTCATGAAAACATCGAGAAAGGCAGAtcTGCGTGAGTGTTtactcacagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccaatctgagagaactggacctgagtgacaataacctgcaggattcaggagtgaagctgctctctgctggactgcagagtccacactgtaaactggagatactgaggttggtaggctgcagtattacagatgaaggttTTGCggctctggtttcagctctgaggtcaaacccctcatcacacctgagagaactgcaTGTGTACTGGAATgaaccaggagaatcaggagtgaagctgctctctgatctaatAAAGTACCCACACTGTAACCTGGAGAAaatacaGTTGGAGCAGTTTTTTGGTCTCGTATGCAGAAGATTATGAGGATAAACATAATGCAGTACAGAGTGTTTTACGGAACAGCTGGGAGAGCTGAAACTCTGATGTCTTACTTTTCTCCTTTATTGACAATGAAGATTTAGCTTTAATAATGTTTTGCTCTGGTTAATCAGATGGTGTATGTAAGAATGAACCTGTCAgaactttatttttctccacAGTTTCATGTTTACAAACAATCAGAGAAGTAATAAAGTAAACCTACATGTGCGTAATCTACTATCATGTAGCTAAAATACATAAACTGAAAAGtatcttttcttattaaaactgtttaacagcaaaacagaacCTTTTTGTACATATAATGTGCCATTTAATTTAGATTTGTCCCTATACAAAGTTTTACAATAGTTATAACTGAAGCAGGGTACAGATATATTAAGTTAATTTCCTGTTCATGCTGATACAGATGTATAATTTGGGTAATTTTGTACATAATTATGCTTCAATgattcacacattaataaaCGTAcagcatataataatatatgttcAATAATTAAGgtaattaaagtgtgtgtgtgtgtgtggtgtatagtTGCACTCAGAATTATTCAACTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21679 lncRNA downstream 7067 33413692 ~ 33454711 (-) False G18412
TU21681 lncRNA downstream 8360 33413692 ~ 33453418 (-) False G18412
TU21697 lncRNA downstream 10858 33449578 ~ 33450920 (-) True G18423
TU21692 lncRNA downstream 19558 33441675 ~ 33442220 (-) True G18418
TU21684 lncRNA downstream 41226 33414410 ~ 33420552 (-) False G18412
TU21699 lncRNA upstream 3154 33475421 ~ 33481825 (-) True G18425
XR_004578370.1 lncRNA upstream 14627 33486894 ~ 33488214 (-) True LOC117597603
XR_004578366.1 lncRNA upstream 21473 33493740 ~ 33497451 (-) True LOC113524631
TU21720 lncRNA upstream 143127 33615394 ~ 33616366 (-) False dnah3
TU21728 lncRNA upstream 246676 33718943 ~ 33719150 (-) True G18446
XM_034305506.1 mRNA downstream 8389 33428924 ~ 33453389 (-) True LOC117597600
XM_026946418.1 mRNA downstream 135225 33319864 ~ 33326553 (-) True fgf21
XM_026946458.2 mRNA downstream 177361 33250847 ~ 33284417 (-) False mybpc2b
XM_026946457.2 mRNA downstream 177361 33250847 ~ 33284417 (-) True mybpc2b
XM_034304680.1 mRNA downstream 489572 32958621 ~ 32972206 (-) True LOC117597388
XM_034304692.1 mRNA upstream 27017 33499284 ~ 33506987 (-) True LOC117595708
XM_034304697.1 mRNA upstream 42228 33514495 ~ 33527798 (-) True LOC117595702
XM_026910980.2 mRNA upstream 59275 33531542 ~ 33546245 (-) True LOC113524637
XM_026910981.2 mRNA upstream 59275 33531542 ~ 33546215 (-) False LOC113524637
XM_026910975.2 mRNA upstream 77020 33549287 ~ 33567633 (-) True LOC113524634
TU21290 other downstream 864973 32589902 ~ 32596805 (-) True G18097
trnar-ccg_3 other downstream 1254081 32207625 ~ 32207697 (-) True trnar-ccg_3
trnar-ccg_2 other downstream 1375229 32086477 ~ 32086549 (-) True trnar-ccg_2
trnar-ucg other downstream 1375977 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_1 other downstream 1383163 32078543 ~ 32078615 (-) True trnar-ccg_1
TU21711 other upstream 99112 33571379 ~ 33571830 (-) True G18432
TU22331 other upstream 542781 34015048 ~ 34016030 (-) False G18848
TU22333 other upstream 542781 34015048 ~ 34037333 (-) False G18848
TU22337 other upstream 542781 34015048 ~ 34037333 (-) True G18848
TU22338 other upstream 542781 34015048 ~ 34016030 (-) False G18848

Expression Profile