RNA id: XM_034308010.1


Basic Information

Item Value
RNA id XM_034308010.1
length 2561
RNA type mRNA
GC content 0.45
exon number 21
gene id cul2
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26425384 ~ 26446101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGAATAGGggagttttttaaaaaagtttgtttgaaaaataagatattttaaactacaaattgtattttatccacttaatcttttaaaaaagtttttatctCATTTCTAAAACCTTACATATGGTGATATTGGTGGTTTACTGTTGtatattatttctctttttatctctgaaACCCCTCTGACCGGAGCAGTAGTTTGTTCCTCGAGACTGGACGATGGCAGAGGTTTAAGTGAAAGCTATCGAAGCTTTTTTTGACAGCCGGGGGAAGTTTTATTCAACACAGTGACATTGGTCAAGCAGTTTGCAGTGGAAGCTGCACGATGTCCTTAAAGCCACGGGTGGTGGATTTTGATGAAACCTGGAACAAGCTGCTCACCACCATCAAGGCGGTGGTGATGCTGGATTACGTAGAGAGAGCTACGTGGAATGACCGCTTCTCTGATATTTACGCATTGTGTGTTGCATACCCAGAGCCCTTGGGTGAACGGCTATACACAGAGACAAAAGTGTTTCTGGAAAATCATGTCCGTCAACTATATAAGAAAGTGCTGGAGTCTGAGGAGAAAGTGCTGCTGATGTATCACAGATACTGGGAGGAGTACAGTAAGGGTGCTGACTACATGGACTGCTTATATCGGTATCTCAACACACAGTTTATAAAGAAGAACAAACTGACTGAAGCAGATCTGCAGTATGGCTATGGAGGAGTCGATATGAATGAACCACTGATGGAGATTGGAGagCTTGCACTTGATATGTGGAGGAAGCTGATGATTGAGCCTCTTCAAGCCATGCTGATCCGAATGCTTCTGAAAGAAATCAAAAATGATCGGTGTGGGGAGCATCCGAATCAGAAAGTAATCCACGGGGTTATCAACTCCTTTGTTCATGTTGAACAGTACAAGAAAAAGTTTCCTCTAAAGTTTTATCAGGAGATTTTTGAAGGGCCGTTTCTGACAAAAACAGGCGAGTACTACACACAAGAAGCCTCCAACCTACTGCAAGAGTCCAACTGCTCTCAGTATATGGAAAAGGTTTTAGGGCGTTTGAAAGACGAAGAGGTGCGATGTCGGAAGTACTTGCATCCAAGCTCCTATGCCAAAGTGATCCATGAATGCCAGCAGAGGATGGTGGCTGACCACCTGCAGTTTCTGCATGGAGAGTGCCAGAACATCGTCAGACAAGAAAAGAGAGATGACATGGCGAACATGTACACACTGCTGCGGGCAGTCGCCAGTGGCTTACCTCACATGATCCAGGAGCTGCAGGTGCACATTCGTGACGAGGGGCTCCGAGCCACCAGTAACCTCTCTCAGGAAAACATGCCAACTCAGTTTGTGGAGTCCGTGTTGGAGGTTCATAGTAAATTTGTCCAGTTGATTAACACAGTGCTAAATGGGGACCAGCACTTCATGAGTGCACTCGACAAGGCTTTGACATCAGTAGTAAACTACAGAGAGCCCAAATCCATTTGTAAAGCACctgaactgCTTGCTAAGTACTGTGACAATCTGCTGAAGAAATCAGCAAAGGGGATGACGGAGAACGAGGTGGAGGATAAACTTACCAGCTTCATCACTGTCTTCAAGTACATTGATGACAAAGATGTCTTTCAAAAGTTTTATGCCAGAATGCTCGCTAAGAGGTTAATACATGGCCTTTCATTATCCATGGACTCTGAGGAAGCCATGATTAACAAACTAAAGCAAGCTTGTGGCTATGAGTTTACAAGCAAACTACACAGAATGTACACGGACATGAGCGTTAGTGCCGATCTCAACAACAAGTTCAACAACTTCATAAAGACCCAGGAGACCGTAGTGGATCTGGGCATCAGCTTTCAGATCTACGTGTTACagGCGGGTGCATGGCCTCTCACGCAGGTTCCTTCATCTACGTTTGCCATCCCTCAGGAACTCGAGAAGAGTGTACAAATGTTTGAGCTGTTTTATAACCAGAATTTCAGCGGGAGGAAGCTCACTTGGCTACACTACCTCTGCACAGgTGAGGTGAAGATGAACTACCTGTCCAAACCCTACGTCGCCATGGTTACCACCTACCAGATGGCGGTGCTGCTGGCGTTTAACAACAGTGAGACGGTGAGCTATAAAGAGCTGCAGGAGAGCACGCAGATGAACGAGAAAGAGCTGCAGAAAACCATCAAGTCCCTGCTGGATGTCAAGATGATCAACCATGACTCACAGAAAGAGGAAATTGAGGCTGAATctactttttcattaaatatgagTTTCACTAGTAAAAGAACCAAGTTTAAGATCACGACTTCGATGCAGCGGGACACACCACAGGAGGTGGAACAGACAAGGAGTGCCGTGGATGAAGACaggaaaatgtatttacagGCTGCTATAGTGAGGATCATGAAAGCCAGGAAAATTCTGAGACACAATGCACTTATACAAGAAgTGATCAACCAGTCCAAAGCCCGGTTCAACCCAAGTATCAGCATGATAAAGAAGTGCATCGAAGTGCTTATCGACAAGCAGTACATAGAGCGAAGCCAGACCTCTGCAGACGAGTACAGCTAtgtggcataa

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K03870 CUL2; cullin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17971 lncRNA downstream 18529 26403523 ~ 26407129 (-) True G15163
TU17916 lncRNA downstream 111331 26310023 ~ 26314327 (-) True G15111
TU17816 lncRNA downstream 315825 26104667 ~ 26109833 (-) True G15012
TU17264 lncRNA downstream 583700 25841122 ~ 25841958 (-) True G14506
TU17275 lncRNA downstream 588021 25835004 ~ 25837637 (-) True G14515
TU17986 lncRNA upstream 551 26446652 ~ 26446940 (-) True G15174
XR_004578627.1 lncRNA upstream 2555 26448656 ~ 26452315 (-) True LOC117597861
TU18132 lncRNA upstream 287261 26733362 ~ 26782469 (-) True G15313
TU18162 lncRNA upstream 307640 26753741 ~ 26754050 (-) False f13a1a.1
TU18178 lncRNA upstream 377134 26823235 ~ 26836478 (-) True LOC117598133
XM_034309095.1 mRNA downstream 6619 26038040 ~ 26419039 (-) False pard3aa
XM_026944759.2 mRNA upstream 44959 26491060 ~ 26512794 (-) False LOC113545420
XM_026944755.2 mRNA upstream 44959 26491060 ~ 26512794 (-) True LOC113545420
XM_034307300.1 mRNA upstream 44959 26491060 ~ 26512297 (-) False LOC113545420
XM_034307309.1 mRNA upstream 44959 26491060 ~ 26512297 (-) False LOC113545420
XM_034307294.1 mRNA upstream 44959 26491060 ~ 26512297 (-) False LOC113545420
XR_004578410.1 other downstream 835955 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 835955 25547057 ~ 25589703 (-) False cadm4
TU16925 other downstream 1021352 25400756 ~ 25404306 (-) False G14258
XR_004578761.1 other upstream 20710 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 1799241 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 1799789 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 1804955 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 1809394 28255495 ~ 28255567 (-) True trnar-ccu_2

Expression Profile