RNA id: XM_034308748.1


Basic Information

Item Value
RNA id XM_034308748.1
length 2933
RNA type mRNA
GC content 0.53
exon number 23
gene id pfkpa
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28160677 ~ 28201075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCCCTCGCTCAGTTCGCGGACGTGCCAAAGCGGTGTGTGGAGAGACAGGAAAAGGGGCGGACAGTGTCCCTCAACCGGCACAATTTTAACCCATCTCGTTTATTTCGGTGTTTCTGCGGAACGAAAATGTCGAAGCCTGACACCAAGAAGTTTTTTGAGAACCTCTCCGGAGCTGGGAAAGCCATAGCGGTGCTGACGAGCGGAGGAGATGCTCAAGgtatgAATGCAGCCGTAAGGGCTGTGGTGCGAATGGGAATCTACGTGGGAGCCAAAGTCTACTTCATTCACGAGGGGTATCAGGGTATGGTGGATGGAGGTGATAACATAAAAGAGGCCACATGGGAGAGTGTGTCCAGCATGCTGCAAGTGGGTGGCACTGTGATCGGAAGTGCGCGGTGTAAAGAGTTCAGGGCACGTGAAGGACGTCTGAAGGCGGCCCATAACCTGGTGCAGCATGGCATCACTAACCTGTGTGTCATTGGCGGAGACGGCAGTCTGACAGGCGCCAACCTCTTCAGGGAGGAGTGGAGCAGCCTGCTGGCTGAGCTTGTGCAGCAGGGTCTGATTGATGACGAGGCTGCGCAGAAATATTCAGCCTTGCACATCGTGGGAATGGTGGGATCCATCGACAACGACTTCTGCGGCACAGACATGACGATCGGCACGGACTCAGCTCTGCACAGAATCATCGAAGTGGTGGACGCCATCATGACTACTGCTCAGAGCCATCAGAGGACGTTTGTGCTGGAGGTGATGGGTCGACACTGTGGCTACCTGGCGCTGGTGAGCGCTTTGGCCTGCGGTGCGGACTGGGTTCTGATTCCCGAGATGCCTCCTGAAGACGGCTGGGAGGAGAAGATGTGTGAGAAGCTCTCTGCGAATCGGGCAGGAAGAAAAAGGCTGAATATCATAATAGTAGCCGAGGGCGCCATTGATCGTAGCAACAAGCCTATAACCACAGATCGTGTGAAAGATCTAGTGGTCCGCTGTCTGGGCTTTGATACACGTGTGACTATCCTGGGTCACGTCCAGAGAGGAGGAACACCGTCAGCCTTCGACAGAATCCTGgCCAGTCGTATGGGCGTGGAGGCCGTATTGGCTCTGCTGGAGACCACGGCTAACACACCGGCCTGCGTCGTCTCGCTGTGTGGAAACCAGGCTGTGAGGCTGCCTCTCatggagtgtgtgcagatgACCCAGGAGGTACAGAAGGCCATGGATGAGAAGAAGTTTGAAGATGCTGTAAAGCTTCGTGGCAGGAGTTTTGAGAACAATCTAAAGACCTACAAGCTCCTGGCTCATCGCAAGCCAGAATCTGAACTTCCACGTAGCAACTTCAACGTGGCGGTGCTGAATGTCGGTGCTCCGGCAGCGGGTATGAACGCGGCCGTGCGCTCTGCCGTCAGAGTGGGCATCTCCGAGGGGCACAAAATGTTCGCCATCAACGACGGCTTCGAGGGCTTCTATAAGGGACagATAAAAGAGATTAAATGGGGAGATGTAGGGGGCTGGACAGGCCAGGGAGGATCTCTGCTAGGAACTAAAAGGACGCTTCCCGCAAAGCACGCTGAAAAAATCGCTGAGCAGATTAGGAAATACAACATAAACGCACTGCTGGTCATCGGAGGGTTTGAGGCGCTTGAGTGTCTGCTGCAGCTCTATGAGGCTCGCAACAACTATGAGGAGTTTTGCATCCCACTGTGTATGCTGCCTGCTACAATTAGTAACAATGTGCCTGGTACTGACCTTAGTATCGGGGCAGACACTGCCCTTAATGCCATCGTGGAGACATGTGACCGTATCAAGCAGTCAGCCAGTGGGACAAAGCGGCGTGTGTTCATCATCGAGACGATGGGAGGGTACTGTGGTTATCTGGCCAGCGTGGGCGGTCTGGCAGCAGGTGCTGACGCCGCTTACATTTATGAAGAGCCCTTCGACATCCGAGACCTGCAGTCTAACGTGGAGCACTTAACAGAGAAGATGAAGACCAGCATTCAGAGAGGACTCGTCCTCAGGAATGAGAACTGTAACGAGAACtacacaacagatttcatttATCAGCTCTACTCAGAGGAGGGCAAAGGCGTGTTTGACTGCAGGAAGAATGTACTTGGCCACATgcagcagGGAGGTGCTCCATCCCCATTCGACCGCAACTTTGGGACTAAAATCTCAGCCAAGGCCATGCAGTGGATCTCGAAGAAGCTGAACGAGTGCTACAGGCAAGATGAAGGGAGAGTGTTTGCTAACACTGAGGACTCGGCCTGTTTGTTGGGGATGCGTCGCCGTAACCTCATCTTCCAGCCTGTTGTTCAGCTGAAGGATGAGACGGACTTTGTtcacaGGATTCCTAAGGAGCAGTGGTGGCTGAAGCTTCGTCCTCTGATGAAGATCTTGGCCAAGTACAAGACGAGTTACGACGTGTCTGACTCGGGCCAGCTGGAACACGTCGTACGCAGCCGAGGCAAGGAGAGTGACGTCACTGCCGCCATCTGAAGTCACACAAGGTCGCAGCAGGGTCAAATGTCACCCTGTTGTGTGTAGGGTGTGCTGACACAGATGCTTCCGTTCATCTTCATCGCGAACTATCGGCTTTTCGTCTCGTCGTTAAACCCGCTCATCCCTCCCCCGGTCGTGTCCTGAATGTGCTGTACGGAGTGGTTTTAGCAAGAGATCAGTCGCTTCCTCGGCTTTTAGTGCTTTTAGCCATGATGTAAGCCACTGTCCGCTGCCTCAAACTTTCACCTCTGATGTGTAAACACAATATTTCTCTCTGTTAAGGCGGAGCTGTACTGTAGATCCACGTGTTAGTATCCAGATGCTGTAACTTATCTTTGAGTCCAGTGCAATCTCCCAAGCACGGTTtggtgtgtggatgtgtgacTATCATGTGTTTAACCAATAAAGTACACCTTCACCTGCTTGTTGAA

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18707 lncRNA downstream 73859 28085261 ~ 28086818 (-) True G15842
TU18705 lncRNA downstream 109631 28050808 ~ 28051046 (-) True G15840
TU18468 lncRNA downstream 710190 27449797 ~ 27450487 (-) False sugct
TU18373 lncRNA downstream 771868 27386291 ~ 27388809 (-) True G15528
TU18346 lncRNA downstream 782517 27377345 ~ 27378160 (-) True G15506
TU18723 lncRNA upstream 5082 28206157 ~ 28206600 (-) True G15852
XR_004579059.1 lncRNA upstream 216041 28417116 ~ 28434542 (-) True LOC117598396
TU18806 lncRNA upstream 235756 28436831 ~ 28453100 (-) True LOC113545501
XR_003404618.2 lncRNA upstream 236786 28437861 ~ 28453100 (-) False LOC113545501
TU19130 lncRNA upstream 820562 29021637 ~ 29021844 (-) True G16228
XM_026944809.2 mRNA downstream 287068 27805814 ~ 27873609 (-) False ccny
XM_026944808.2 mRNA downstream 287068 27805814 ~ 27873609 (-) True ccny
XM_026944835.2 mRNA downstream 364837 27792108 ~ 27795840 (-) True LOC113545464
XM_026944751.2 mRNA downstream 607171 27485502 ~ 27553506 (-) False sugct
XM_034303139.1 mRNA upstream 399963 28601038 ~ 28638002 (-) False wdr37
XM_034303135.1 mRNA upstream 399963 28601038 ~ 28638001 (-) False wdr37
XM_034303137.1 mRNA upstream 399963 28601038 ~ 28636392 (-) False wdr37
XM_034303134.1 mRNA upstream 399963 28601038 ~ 28636392 (-) True wdr37
XM_026944773.2 mRNA upstream 590787 28791862 ~ 28803226 (-) True bdh1
XR_004578761.1 other downstream 1648380 26466811 ~ 26512297 (-) False LOC113545420
XR_004578410.1 other downstream 2570974 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 2570974 25547057 ~ 25589703 (-) False cadm4
TU16933 other downstream 2756371 25400756 ~ 25404306 (-) False G14258
trnar-ccu other upstream 44267 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 44815 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 49981 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 54420 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_3 other upstream 55170 28256245 ~ 28256317 (-) True trnar-ccu_3

Expression Profile