RNA id: XR_003404619.2


Basic Information

Item Value
RNA id XR_003404619.2
length 699
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id LOC113545502
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25498527 ~ 25511252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGGGGCAACTCCATGTTCACAGAAGAataggaagaagaggaagaggagcaaGGATGCGTGGTGGTGGTGTACTGAGTGGAAGAAAGCAGTCTAGAGGAAGAGGCAGAAGCGTACAAAGACATGGAGCTGTCCCAGCTGGAGCCCCGAGCCTTTGAATGTTGATGGCGGAGGAATCAGTGGATACCATGGATAAGAGCTCAGGAGGAGGGGCAAGAAAGATGGAGTGGAGAAGCAGATGAGAGGGAGGGGTGGAGGAGAAGTAAAAGAGGAGAGGGCATGCTCACAATACAGTACAGAGAGGCTGGAACAGGCAGAGCACTCAGTCTTCAGAGATACTGACCATGATAACATACTGCAGCTCATCAAGGAGTGCTTTCTAACAGGAAGTGCTGAGTAACAGGTCACACCACACTGGCACTTTTACTGCCACTGACGACATCAGAGTGCAACTCCAGGACAGGATGTGACTGAATATGCGGCAAACTTAGTCAGGGAGATTTCTGGGGccgatgagtgtgtgtgtgtgtgtgtgtgtgtgcacgtgatGGGCAGAGCTGTGGTGCAGGACTACAGGGCACACAAGCTTATTATTGTCTCCTGAACCCGCTTGCTTGATCAAAGGGAGAGCGAGCTACCTCACACTGACtcagtctgacacacacacacacacacacacacacacagtgttccatTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17182 lncRNA downstream 11127 25395487 ~ 25487400 (-) False bcam
TU17187 lncRNA downstream 11127 25395487 ~ 25487400 (-) False bcam
TU17193 lncRNA downstream 69017 25408078 ~ 25429510 (-) True G14444
TU17184 lncRNA downstream 77309 25395487 ~ 25421218 (-) False bcam
TU17185 lncRNA downstream 77309 25395487 ~ 25421218 (-) False bcam
TU17202 lncRNA upstream 39886 25551138 ~ 25556770 (-) False cadm4
TU17220 lncRNA upstream 124852 25636104 ~ 25696835 (-) True G14464
TU17270 lncRNA upstream 246822 25758074 ~ 25763495 (-) False fxyd7
TU17271 lncRNA upstream 246822 25758074 ~ 25763495 (-) False fxyd7
TU17272 lncRNA upstream 246822 25758074 ~ 25763764 (-) True fxyd7
XM_026944771.2 mRNA downstream 11102 25443977 ~ 25487425 (-) False bcam
XM_026944769.2 mRNA downstream 11103 25437867 ~ 25487424 (-) True bcam
XM_026944770.2 mRNA downstream 11104 25437867 ~ 25487423 (-) False bcam
XM_026944882.2 mRNA downstream 161918 25335601 ~ 25336609 (-) True LOC113545493
XM_034305958.1 mRNA downstream 164819 25318286 ~ 25333708 (-) False osgin2
XM_026944870.2 mRNA upstream 10237 25521489 ~ 25527931 (-) False rps19
XM_026944871.2 mRNA upstream 10237 25521489 ~ 25527931 (-) True rps19
XM_026944806.2 mRNA upstream 39878 25551130 ~ 25705515 (-) False cadm4
XM_026944807.2 mRNA upstream 39878 25551130 ~ 25589702 (-) False cadm4
XM_026944805.2 mRNA upstream 39878 25551130 ~ 25589702 (-) True cadm4
TU16925 other downstream 94221 25400756 ~ 25404306 (-) False G14258
TU16933 other downstream 94221 25400756 ~ 25404306 (-) False G14258
TU16922 other downstream 94221 25401945 ~ 25404306 (-) False G14258
TU16407 other downstream 951690 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 1097772 24391530 ~ 24400755 (-) False si:dkey-92i15.4
XR_004578410.1 other upstream 35782 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 35805 25547057 ~ 25589703 (-) False cadm4
XR_004578761.1 other upstream 955559 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 2734090 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 2734638 28245890 ~ 28245961 (-) True trnam-cau

Expression Profile