RNA id: XR_004576936.1


Basic Information

Item Value
RNA id XR_004576936.1
length 632
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC117595754
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30637849 ~ 30640024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAAGATACAATAGCACcaagtgagaaaacagaaaaaAATTGTAAACATGAAATGGTCTTCACAACTGTTTCGAGCATGAACAAATGTGCAGCATGTGTTGGACCTGTAGCATCACTCAAATGGATTGGTCTGAGATGCAAAGtCTGCAATTGTTTTGGCACAAGTCCTGCTTTGTAAAACTTATTAAGAATGAGTCACTATCATGGCTTCCAAACCCCAGGAGATATCTGGTGTGGGAATGTAGACTCTGCCATGGCTGCCAAACCCAAAACCCTGACCCTACCGTGGTGTTCATTTAGTTCTCCTGGCTAAACTGATGGAAGTGAATCTGAGAATGGCACTGAAAGTGAGAATATGAATGTGTCTATGAGTGCACCAGTGCAGATTGGTAGGTTTTTCTAACATATTGATGTGTTACATGCCCAATTGTTTTGGTCATGATCAGTCCACACTGTTTGTGTGCTGAATAATGTGGTAATCTCTTCTTACAGGGATGCAGAAGGATCACCCACCAAAAGAAGCCAAAGCTGGATGTTCTGGTTGTATTTTCCAAGTTATATATGtggttttgacttttattttagtcatataactcataattatcatttttgttttacctatttttaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19909 lncRNA downstream 265 30637083 ~ 30637584 (-) True G16897
XR_004578412.1 lncRNA downstream 255274 30379844 ~ 30382575 (-) True LOC117597677
XR_004578413.1 lncRNA downstream 255274 30379867 ~ 30382575 (-) False LOC117597677
TU19682 lncRNA downstream 304676 30332574 ~ 30333173 (-) False gpr158a
TU19714 lncRNA downstream 306236 30331397 ~ 30331613 (-) True G16747
XR_004577837.1 lncRNA upstream 123561 30763585 ~ 30764477 (-) True LOC117596846
TU20022 lncRNA upstream 126165 30766189 ~ 30766709 (-) True G17000
TU20049 lncRNA upstream 201941 30841965 ~ 30889214 (-) True G17025
TU20248 lncRNA upstream 348099 30988123 ~ 30990026 (-) False telo2
TU20249 lncRNA upstream 351866 30991890 ~ 30992853 (-) False telo2
XM_026944717.2 mRNA downstream 51159 30582017 ~ 30586690 (-) True xrcc2
XM_034305563.1 mRNA downstream 75938 30400155 ~ 30561911 (-) False kmt2ca
XM_026947949.2 mRNA upstream 329993 30970017 ~ 30982915 (-) True LOC113547558
XM_034308978.1 mRNA upstream 348270 30988294 ~ 31014649 (-) True telo2
XM_026947966.2 mRNA upstream 526402 31166426 ~ 31312036 (-) False ntng1a
XM_034308038.1 mRNA upstream 526402 31166426 ~ 31312036 (-) False ntng1a
XM_026947963.2 mRNA upstream 526402 31166426 ~ 31312036 (-) True ntng1a
trnah-gug other downstream 4712 30633066 ~ 30633137 (-) True trnah-gug
trnaf-gaa other downstream 648559 29989218 ~ 29989290 (-) True trnaf-gaa
trnar-ccu_3 other downstream 2381532 28256245 ~ 28256317 (-) True trnar-ccu_3
trnar-ccu_2 other downstream 2382282 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_1 other downstream 2386721 28251056 ~ 28251128 (-) True trnar-ccu_1
TU19913 other upstream 674 30640698 ~ 30642974 (-) True G16900
LOC117595698 other upstream 145939 30785963 ~ 30789410 (-) True LOC117595698
TU20271 other upstream 353045 30993069 ~ 30997169 (-) False telo2
TU20272 other upstream 353045 30993069 ~ 30996234 (-) False telo2
TU20251 other upstream 362385 31002409 ~ 31003309 (-) True G17199

Expression Profile