RNA id: XR_004579059.1


Basic Information

Item Value
RNA id XR_004579059.1
length 287
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC117598396
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28417116 ~ 28434542 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTAAGTAGGCCATGATAAAGCAGCAGAAAACCAGGGAAAGGCAGAAACTCCTGCATGTACGCGTTATTCTACAGGACGTAGCTTTCAGGAAACTGCATCTTACGCTGGCTCCTTCGCTGCATAGTCATCTTTCTCTCGGTCTTTCAACCCTGTGACACCACCGAGAGATAAAAGGGATGGGAAAAAACTGAAAGCCAAGAATGAAACATGCAAGGGACTGGAAATTTCTGGAACACATCATTAGGTTTGTCACACATCTTAGCCCCACACCCTGCCGTTTCTCTG

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18723 lncRNA downstream 210516 28206157 ~ 28206600 (-) True G15852
TU18720 lncRNA downstream 240270 28175684 ~ 28176846 (-) True G15849
TU18707 lncRNA downstream 330298 28085261 ~ 28086818 (-) True G15842
TU18705 lncRNA downstream 366070 28050808 ~ 28051046 (-) True G15840
TU18468 lncRNA downstream 966629 27449797 ~ 27450487 (-) False sugct
TU18806 lncRNA upstream 2289 28436831 ~ 28453100 (-) True LOC113545501
XR_003404618.2 lncRNA upstream 3319 28437861 ~ 28453100 (-) False LOC113545501
TU19130 lncRNA upstream 587095 29021637 ~ 29021844 (-) True G16228
TU19203 lncRNA upstream 774865 29209407 ~ 29212056 (-) True G16291
TU19299 lncRNA upstream 1113668 29548210 ~ 29604197 (-) False dipk2ab
XM_034308781.1 mRNA downstream 216041 28160677 ~ 28201075 (-) True pfkpa
XM_034303139.1 mRNA upstream 166496 28601038 ~ 28638002 (-) False wdr37
XM_034303135.1 mRNA upstream 166496 28601038 ~ 28638001 (-) False wdr37
XM_034303137.1 mRNA upstream 166496 28601038 ~ 28636392 (-) False wdr37
XM_034303134.1 mRNA upstream 166496 28601038 ~ 28636392 (-) True wdr37
XM_026944773.2 mRNA upstream 357320 28791862 ~ 28803226 (-) True bdh1
trnar-ccu_3 other downstream 160799 28256245 ~ 28256317 (-) True trnar-ccu_3
trnar-ccu_2 other downstream 161549 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_1 other downstream 165988 28251056 ~ 28251128 (-) True trnar-ccu_1
trnam-cau other downstream 171155 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu other downstream 171702 28245342 ~ 28245414 (-) True trnar-ccu
trnaf-gaa other upstream 1554676 29989218 ~ 29989290 (-) True trnaf-gaa
trnah-gug other upstream 2198524 30633066 ~ 30633137 (-) True trnah-gug
TU19913 other upstream 2206156 30640698 ~ 30642974 (-) True G16900
LOC117595698 other upstream 2351421 30785963 ~ 30789410 (-) True LOC117595698
TU20271 other upstream 2558527 30993069 ~ 30997169 (-) False telo2

Expression Profile