Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579111.1 |
| length | 278 |
| lncRNA type | intronic |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC117598443 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 30999480 ~ 31001678 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU20249 | lncRNA | downstream | 6627 | 30991890 ~ 30992853 (-) | False | telo2 |
| TU20248 | lncRNA | downstream | 9454 | 30988123 ~ 30990026 (-) | False | telo2 |
| TU20049 | lncRNA | downstream | 110266 | 30841965 ~ 30889214 (-) | True | G17025 |
| TU20022 | lncRNA | downstream | 232771 | 30766189 ~ 30766709 (-) | True | G17000 |
| XR_004577837.1 | lncRNA | downstream | 235003 | 30763585 ~ 30764477 (-) | True | LOC117596846 |
| TU20275 | lncRNA | upstream | 27778 | 31029456 ~ 31029677 (-) | True | G17222 |
| TU20318 | lncRNA | upstream | 95154 | 31096832 ~ 31097965 (-) | True | G17265 |
| TU20331 | lncRNA | upstream | 125055 | 31126733 ~ 31130151 (-) | False | G17277 |
| TU20335 | lncRNA | upstream | 125055 | 31126733 ~ 31130151 (-) | False | G17277 |
| TU20336 | lncRNA | upstream | 125055 | 31126733 ~ 31130151 (-) | False | G17277 |
| XM_026947949.2 | mRNA | downstream | 16565 | 30970017 ~ 30982915 (-) | True | LOC113547558 |
| XM_026944717.2 | mRNA | downstream | 412790 | 30582017 ~ 30586690 (-) | True | xrcc2 |
| XM_034305552.1 | mRNA | downstream | 437569 | 30400155 ~ 30561911 (-) | False | kmt2ca |
| XM_026947966.2 | mRNA | upstream | 164748 | 31166426 ~ 31312036 (-) | False | ntng1a |
| XM_034308038.1 | mRNA | upstream | 164748 | 31166426 ~ 31312036 (-) | False | ntng1a |
| XM_026947963.2 | mRNA | upstream | 164748 | 31166426 ~ 31312036 (-) | True | ntng1a |
| XM_026947965.2 | mRNA | upstream | 164748 | 31166426 ~ 31312036 (-) | False | ntng1a |
| XM_026947947.2 | mRNA | upstream | 324236 | 31325914 ~ 31327457 (-) | True | prmt6 |
| TU20271 | other | downstream | 2311 | 30993069 ~ 30997169 (-) | False | telo2 |
| TU20272 | other | downstream | 3246 | 30993069 ~ 30996234 (-) | False | telo2 |
| LOC117595698 | other | downstream | 210070 | 30785963 ~ 30789410 (-) | True | LOC117595698 |
| TU19913 | other | downstream | 356506 | 30640698 ~ 30642974 (-) | True | G16900 |
| trnah-gug | other | downstream | 366343 | 30633066 ~ 30633137 (-) | True | trnah-gug |
| TU20251 | other | upstream | 731 | 31002409 ~ 31003309 (-) | True | G17199 |
| TU20760 | other | upstream | 998947 | 32000625 ~ 32052554 (-) | True | G17630 |
| trnar-ccg | other | upstream | 1017417 | 32019095 ~ 32019167 (-) | True | trnar-ccg |
| trnar-ccg_1 | other | upstream | 1076865 | 32078543 ~ 32078615 (-) | True | trnar-ccg_1 |
| trnar-ucg | other | upstream | 1084051 | 32085729 ~ 32085801 (-) | True | trnar-ucg |
