Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117596262 |
| length | 1052 |
| RNA type | V_segment |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC117596262 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 17275499 ~ 17276968 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU460533 | lncRNA | upstream | 46255 | 17210017 ~ 17229244 (+) | True | G388507 |
| TU460537 | lncRNA | upstream | 72882 | 17194324 ~ 17202617 (+) | True | G388508 |
| TU460543 | lncRNA | upstream | 104820 | 17170453 ~ 17170679 (+) | True | G388514 |
| TU460474 | lncRNA | upstream | 218008 | 17047403 ~ 17057491 (+) | True | G388468 |
| TU460477 | lncRNA | upstream | 219589 | 17049087 ~ 17055910 (+) | False | G388468 |
| XR_004577452.1 | lncRNA | downstream | 50596 | 17327564 ~ 17329234 (+) | True | LOC117596270 |
| TU460595 | lncRNA | downstream | 133233 | 17410201 ~ 17410954 (+) | False | radx |
| TU460583 | lncRNA | downstream | 178527 | 17455495 ~ 17461055 (+) | False | hmgn7 |
| TU460654 | lncRNA | downstream | 297759 | 17574727 ~ 17620017 (+) | True | G388619 |
| TU460684 | lncRNA | downstream | 410036 | 17687004 ~ 17738681 (+) | True | G388640 |
| XM_026921770.2 | mRNA | upstream | 205682 | 17064901 ~ 17069817 (+) | True | ckma |
| XM_026921741.2 | mRNA | upstream | 281634 | 16982196 ~ 16993865 (+) | True | hnrnpl |
| XM_026921742.2 | mRNA | upstream | 281634 | 16982196 ~ 16993865 (+) | False | hnrnpl |
| XM_026921760.2 | mRNA | upstream | 293884 | 16976489 ~ 16981615 (+) | True | kptn |
| XM_034300678.1 | mRNA | upstream | 325454 | 16944596 ~ 16950045 (+) | True | h3f3c |
| XM_026921546.2 | mRNA | downstream | 885 | 17277853 ~ 17280577 (+) | False | LOC113531069 |
| XM_026921473.2 | mRNA | downstream | 5021 | 17281989 ~ 17286434 (+) | False | rpl36a |
| XM_026922530.2 | mRNA | downstream | 40898 | 17317866 ~ 17322251 (+) | True | tnfsf10l4 |
| XM_026922269.2 | mRNA | downstream | 53128 | 17330096 ~ 17338411 (+) | True | mtnr1c |
| XM_026921531.2 | mRNA | downstream | 64450 | 17341418 ~ 17344855 (+) | True | vma21 |
| TU460111 | other | upstream | 618386 | 16655669 ~ 16657113 (+) | True | LOC113531241 |
| TU460079 | other | upstream | 719967 | 16546141 ~ 16555532 (+) | False | cdc42ep2 |
| trnam-cau_49 | other | upstream | 1127067 | 16148360 ~ 16148432 (+) | True | trnam-cau_49 |
| TU459555 | other | upstream | 1236894 | 16034823 ~ 16038605 (+) | True | LOC113531248 |
| XR_004577401.1 | other | upstream | 1908252 | 15361358 ~ 15367247 (+) | True | fkbp6 |
| TU460579 | other | downstream | 922 | 17277890 ~ 17280519 (+) | True | LOC113531069 |
| XR_003403218.2 | other | downstream | 1499 | 17278467 ~ 17280328 (+) | False | LOC113531069 |
| TU460582 | other | downstream | 5076 | 17282044 ~ 17289481 (+) | True | rpl36a |
| TU460613 | other | downstream | 64457 | 17341425 ~ 17344799 (+) | False | vma21 |
| TU460649 | other | downstream | 319251 | 17596219 ~ 17602819 (+) | False | LOC113524235 |
