RNA id: TU452766


Basic Information

Item Value
RNA id TU452766
length 4185
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G381875
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6275707 ~ 6280046 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTGCTGTTAAGCCAAGCTGGGGAAAGTTGATAATGTCATAGCACTGATTAAGGCACAAAGTAGATCACAAGACATTGCTGAGATGCAAGATGAAAGCAGGAGCCCTTGTGAGAGAGGCATTTAGCAGCAAGTTTTACTTTGGACTTTACACATGGATACTTTAGATTTTCTACATACAAAATAccctttgacaaaaaaaataaactatgtAAAGTAGTTTTACTTTACAGAAATGGCCTATAATCATATTTTCTTTATGCTCAGGATCTATGAATATACATATCTAGATAAGGTCAAGTGGGAATCCAGCATCTGACTCTCAGTTTATACCCAGTGACTAAACTTATCAATATAAATCCTATCAATCATGAATGTGTTCATCACTCACAATAGCTACACTTACTGCACAGGTTCTGTGAATAAATGATTGCAGGTCCCACATCATCTTCTAACACTGGGCATTAAAAGTCCAAAGCTATGGAGCTCAAACTCCTCATATCACCTGTATATGGAAATACTGAAAAAGTCTCTGTTTTAAAGTGAGAAATGTGACATTTGCACTGTACAATCAGAATGAACCATCAGAggccattaaaaaaataatcacgaTTTTGAGTGCAGGGGtagtttatgaataaatattggGAAGTGCTGGGTTCTACATCTAAAGGCTCCACTAAACACTAAATGCTGGCGTGACTAAATTTTACGTAGGAAGCAGAATGCTAGTCAGTCACTACAATTCATTGCAAGCAGCATTAGCATTTTGACTGAAATATTTCAGCAAacctcagtttaaaaaaaaaaaaaaaaaatagagaaCGGGAAAACACTGTGATGATAAACCTCATTAAGTGAGCATCTTGCTATTGTCAGAAACCAGCTGAGAAAGCCACATGAAACCCTCAGACCTCCAATACCACAACAGAAAGTAGTGAAAGCCCACAGAGAGACTGAAACTGCAAGCACCCAGATTAACAACATACATCGCTTCAAATCACTTTAAATTATGATTTTAGACTTGTTTTGTGGTTAGTGGTGAAGATACAGCCAAAATTGTAgtatacacatttttatgtagattttttttttatatacacattttttaatatagaaatcAACTGGGCTCTTCTCAGTTGTGGATATTTTACAATTGATAGATGGTTaattttaatgcttattttataCCTTTTGAAGTATAATTTAGTTACAATTATCACAGTTTAATAGGAGTAGCTTGCATGTCCTGGATGAAATAAGAGTCTAGTCTAACTGGGACGAAACTGTATCACCACTGACAGTTTTCTgcagtttttgcacatttaaaaatatttggtaAGTTCACAttcctttgcattttttttttttttttttttttgcccctctCCTATGCCAGGGGGTGTGTGCTCGCTTGCCCTAATCATTAATTTCATACATTCTTCATAACTACCCTTAAAATTTTGGAAGGATGGACTGTGCCATACTACTGCAATGAAATGCACAAGTCACTTTAATAttggtttttaataataataatattgtatgttttttatgaGCGTAACTGTAGATGGATATAGTTGCATTTCCATGAGAGATATGAAATTTCGCTGTATGTTACATGCAATGAAAATAAAGGTATTTAATTCAACATCCGTTTAGTAACTGGAATTTAATTCTCAGTGGATAATACACATTAGTTTAGGATGAATTCGTTGCTTCTCACTACATGCAAGCATTTGAGTCGATTTAAAATTCGCTCACAGATTTCTGACGTTGTTTCTCCCATTTTTCTTCTGCAGAATTGACGCTTCAGGTGCGTGTGATGTCATGTGGTACAACATCGACGGTTACTGGTCATGCAGCACGAAATGGCTGCATGAGTGCAAAAGCTGCAGAATCGACTTGctgcattaaaaaacaaattgcgattttaatctttttttcatgCAGACCTAATGAGATTTGGggcatgttttttaattgtataaacAAACAAGATAGTGAAGTTTCGGTATTTGTACTTCATTTAATTCTGCTTATTGCTGGTACTTCCAACATGTTGGCTTTGGGGTTTTCATTGACAAGACTGAGCTAAGAAAAAGCTTGTTAGTTAATTTATTTAGCTAAGATTTTCACCAACACTTTGCAGGCTAAGTTAGCTGCTTTGTTATTTTTAGGCTCCAGGGTAATAAGATTACTGATATACACCTAGATATTAATAAATGCCAAGTTTTGTTTTGGGAAAAGCAGCACGTGtagtttgttttaaatgtttttacggGTTTACAATTTTAACCTGTATACTAGCCACCACTAAGGTAACCACAGACATGGGTACAGAAAAACCCTTCAAGAGATGCTGCAGCCACCCCAAACACAGAATTGAATCACCTTAAACCACTCAGTTATTATGAGGTGAGGAATCGAGCTGACTCTAGACCAGTATTTTCACGTGGAGTGTGAAGCTCACTTCAGGAACAGGTGCAGGTGAGCAGGAGCAGTCAGGGGGAAGAGCAGAGAACAGCAGATGGAGGTGACCTAGGTCAGGCGCTACATACACAGCAGGGGATCTGAGGAAGGGGTGGGGATTGGGAGAGTTGGGGTGGGTCCTCACCTGGAGATATGGAGGCTGGGTTGAAAACCCTAGGAGGAAAAGGGGGCTGAGGTCCAGGGAGGTACGTGATGCGGTCCAAGTTAGGGGAACCTGTCCCCCCAGGGTGAGGCAACAGGATGGTGGGAGGCATCTGGGCTAGATCAATTATACCTTTTGCAGACAGAAGCAAAGGGACCAAAGGGTAAGCAACCACAACCAGGACTCACACTTCACTTTGTATTCGAGAGCCAGAAGCGTTTATGAGCTTCTACAGTACAGCAGCTGTTGCATTAGGATCAGACTTTCAATTTGGAATGAACAATGAACTGTACTATAAACTGATACTAGATGATGTTTTACAGATTAGATATAAGGTTAGGGCTGAAAGCTGATCAgaatacattacatcattaaTCAAACAAAAGTGCTGGTTAGTTTGTGGTTAGTTATGGTGCAGTGTGGAATAGTGGTTTAGGTAACATATGATCCAAAAGTCAGAGTCTCCACTCGAGCAACTGCACCCATATTCtgtgtaaattaaaatgtttaatttgtcaTATAGATGTCAGTATCATACTACGTAATataggaaaagaagaaaattaaggTGACTTTCTTTATTGTGACTCAaagttgtaaaatatataaaaatgaatgccTTTTTTGCGTTATGACACAGATGGCAAATCTGCCCTGATACAAGGAGCAGCCTCAGCCCTAAATTCAttgattttgatttaattttactcTCTTTTGTCCTGAAGGTCATTTGCTTCTGATCGTCTGGAAAAGGTTACCACTAGTTCACACGAGCACAAGGTCTACAGACTACAAATTTCTCCCTGTAAACATGTAGCCCCCTCACCTCTGGCTCCAGCAGGGTATGGGATGGCGATCTGCTGTTCCCTGGGTGACAGGCCTCTGGCGACCTCAGCCCGTGGGATGACCTGCATTTGCTGCGAGGTAATGTAATCATTCAAGATTGTCTGGCGCGTGTTCTCCATGGTGTACAGTTGGTAGGTGTTGGGGTATCCGGTAGGGGATGGCTGCCGTTGGAACATGTAAGCTGCGGAGAACAAGAACACAGGTTTACAGATATcgagaagaaaacaaacaaaaacaaacaaaaaaaaaaaccacagccaAGCAGTATATACCATGAAACAACATTGAAAAAAAGGCAGCTGTGACAGACGCTATTGACAGAAACTATACTGCAGACTGACAAGTAGGCAGTGGCGGTTTAGAGGTTAAGACTACTAAGGCTACTGATTAGAgttgtgagttcaaaccccAACACCACAAATCAGCCACTGTCAGGCTTGTGAACAACTCACTTAAACCACAACTCCATCAGTCATATCATGGCTGATCATACGCTCTGTCCCCGTCTACCTAACAAGCTGGCAGATGTGAAGTAAAGAATTTCGCTGTACTGTACTTGtaaatatgataataaaaacTTTCAAAGACCTCACTCAATATGGCTAGTACACTATATTTGACTGTTTAACTGTTAATGTCATCATTAGCATTACTTAAAAAAAGATGTATTATAATTTTTAGCAATTATTTTACAGTGGGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU452790 lncRNA upstream 24634 6226565 ~ 6251073 (+) True G381895
TU452759 lncRNA upstream 41141 6209445 ~ 6234566 (+) True G381868
TU452719 lncRNA upstream 87721 6117000 ~ 6187986 (+) True G381833
TU452725 lncRNA upstream 92234 6136273 ~ 6183473 (+) True G381836
TU452715 lncRNA upstream 140682 6124195 ~ 6135025 (+) True G381832
TU453091 lncRNA downstream 172317 6452363 ~ 6452575 (+) True G382122
TU453109 lncRNA downstream 221969 6502015 ~ 6513170 (+) True G382138
TU453117 lncRNA downstream 256985 6537031 ~ 6537231 (+) True G382146
TU453119 lncRNA downstream 269756 6549802 ~ 6550804 (+) True G382148
TU453180 lncRNA downstream 295933 6575979 ~ 6576182 (+) True G382205
XM_026922138.2 mRNA upstream 162258 6063809 ~ 6113449 (+) True LOC113531397
XM_026922121.2 mRNA upstream 223351 6014295 ~ 6052356 (+) False zmp:0000001168
XM_026922401.2 mRNA downstream 63268 6343314 ~ 6370416 (+) True pigl
XM_026922479.2 mRNA downstream 100616 6380662 ~ 6383685 (+) True ubb
XM_026922493.2 mRNA downstream 108931 6388977 ~ 6405621 (+) True p2rx5
XM_026922288.2 mRNA downstream 127978 6408024 ~ 6414180 (+) True shpk
XM_026922287.2 mRNA downstream 135357 6415403 ~ 6432002 (+) True LOC113531512
TU452787 other upstream 33010 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 94794 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 223810 5990022 ~ 6051897 (+) False zmp:0000001168
XR_003403255.2 other upstream 223810 5990023 ~ 6051897 (+) False zmp:0000001168
TU452712 other upstream 298782 5975369 ~ 5976925 (+) True G381829
TU452818 other downstream 100649 6380695 ~ 6383660 (+) False ubb
XR_004577432.1 other downstream 682164 6962210 ~ 7058199 (+) False LOC113531592
XR_003403276.1 other downstream 996799 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 997553 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1862565 8142611 ~ 8144880 (+) False spns3

Expression Profile