RNA id: TU453091


Basic Information

Item Value
RNA id TU453091
length 213
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G382122
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6452363 ~ 6452575 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcatGACTATGAAGGCAGCATAACTTGGGATAACTTGGATTATatcatgttaataaatattcataatcacCTCTGGTCTACAGATGTAAATGATGGAACCTCAAATACGAAAACTGCCAACAAACCACCACATCATATTAACTGAAGGTTGAGTTCAATATTAACCACTGTAGATGTATTTTTCCTCCCGTAAATATTGGTATTCATTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU452766 lncRNA upstream 172317 6275707 ~ 6280046 (+) True G381875
TU452790 lncRNA upstream 201290 6226565 ~ 6251073 (+) True G381895
TU452759 lncRNA upstream 217797 6209445 ~ 6234566 (+) True G381868
TU452719 lncRNA upstream 264377 6117000 ~ 6187986 (+) True G381833
TU453109 lncRNA downstream 49440 6502015 ~ 6513170 (+) True G382138
TU453117 lncRNA downstream 84456 6537031 ~ 6537231 (+) True G382146
TU453119 lncRNA downstream 97227 6549802 ~ 6550804 (+) True G382148
TU453180 lncRNA downstream 123404 6575979 ~ 6576182 (+) True G382205
TU453190 lncRNA downstream 126538 6579113 ~ 6580610 (+) True G382207
XM_034300947.1 mRNA upstream 930 6436800 ~ 6451433 (+) True LOC113531597
XM_026922287.2 mRNA upstream 20361 6415403 ~ 6432002 (+) True LOC113531512
XM_026922288.2 mRNA upstream 38183 6408024 ~ 6414180 (+) True shpk
XM_026922493.2 mRNA upstream 46742 6388977 ~ 6405621 (+) True p2rx5
XM_026922479.2 mRNA upstream 68678 6380662 ~ 6383685 (+) True ubb
XM_026921474.2 mRNA downstream 69589 6522164 ~ 6532894 (+) True eral1
XM_034300454.1 mRNA downstream 85203 6537778 ~ 6545735 (+) True tbx16l
XM_026921928.2 mRNA downstream 181395 6633970 ~ 6653902 (+) True LOC113531298
XM_026921929.2 mRNA downstream 205478 6658053 ~ 6662250 (+) True c1qbp
XM_026921478.2 mRNA downstream 216357 6668932 ~ 6687976 (+) True LOC113531024
TU452818 other upstream 68703 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 209666 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 271450 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 400466 5990022 ~ 6051897 (+) False zmp:0000001168
XR_003403255.2 other upstream 400466 5990023 ~ 6051897 (+) False zmp:0000001168
XR_004577432.1 other downstream 509635 6962210 ~ 7058199 (+) False LOC113531592
XR_003403276.1 other downstream 824270 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 825024 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1690036 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1729816 8182391 ~ 8213107 (+) True G383217

Expression Profile