RNA id: TU453117


Basic Information

Item Value
RNA id TU453117
length 201
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G382146
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6537031 ~ 6537231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttcatggtgccctgtgatgaactggcgtCCCACTCAGGGGTGGGAGTTCCCagcattcccaggataggctctggatccaccattaCCCTAACCAGGATGGAGTGCTTACTATAAATGATTTTGTCTAGTTATTGTTGTCTAGTTCACTGAGATTAAAATGAATGATGGCAGGACCTGTTATATACTATACTGAATTAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453109 lncRNA upstream 23861 6502015 ~ 6513170 (+) True G382138
TU453091 lncRNA upstream 84456 6452363 ~ 6452575 (+) True G382122
TU452766 lncRNA upstream 256985 6275707 ~ 6280046 (+) True G381875
TU452790 lncRNA upstream 285958 6226565 ~ 6251073 (+) True G381895
TU452759 lncRNA upstream 302465 6209445 ~ 6234566 (+) True G381868
TU453119 lncRNA downstream 12571 6549802 ~ 6550804 (+) True G382148
TU453180 lncRNA downstream 38748 6575979 ~ 6576182 (+) True G382205
TU453190 lncRNA downstream 41882 6579113 ~ 6580610 (+) True G382207
TU453261 lncRNA downstream 129408 6666639 ~ 6668385 (+) True G382257
TU453282 lncRNA downstream 269948 6807179 ~ 6809541 (+) True G382274
XM_026921474.2 mRNA upstream 4137 6522164 ~ 6532894 (+) True eral1
XM_034300947.1 mRNA upstream 85598 6436800 ~ 6451433 (+) True LOC113531597
XM_026922287.2 mRNA upstream 105029 6415403 ~ 6432002 (+) True LOC113531512
XM_026922288.2 mRNA upstream 122851 6408024 ~ 6414180 (+) True shpk
XM_026922493.2 mRNA upstream 131410 6388977 ~ 6405621 (+) True p2rx5
XM_034300454.1 mRNA downstream 547 6537778 ~ 6545735 (+) True tbx16l
XM_026921928.2 mRNA downstream 96739 6633970 ~ 6653902 (+) True LOC113531298
XM_026921929.2 mRNA downstream 120822 6658053 ~ 6662250 (+) True c1qbp
XM_026921478.2 mRNA downstream 131701 6668932 ~ 6687976 (+) True LOC113531024
XM_026922170.2 mRNA downstream 153805 6691036 ~ 6773907 (+) True srrm3
TU452818 other upstream 153371 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 294334 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 356118 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 485134 5990022 ~ 6051897 (+) False zmp:0000001168
XR_004577432.1 other downstream 424979 6962210 ~ 7058199 (+) False LOC113531592
XR_003403276.1 other downstream 739614 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 740368 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1605380 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1645160 8182391 ~ 8213107 (+) True G383217

Expression Profile