RNA id: TU453190


Basic Information

Item Value
RNA id TU453190
length 1434
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G382207
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6579113 ~ 6580610 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGCACTAATAATCTTTTCGATTTATGTTCACGAGAATATCTTATCTGTACACATGAACAAAGGTGGAGCTTCTTTAAAATGTGCACACATAAAAGTTAGTCACATGTCTCTAGGAAAGGTGTCAGTGTTTTACGCTTTCACTCCGAGTCCAAAGTGCAAAAACCAATTCTACATGACATCAAGGAATTCAAATGCCTCCTCGGGTTGGATAAAAATCATGCACTGGATGCAGGCTTTAAAAAGCACGAGCACTTAACCATTTGTTCGTATGCAATTTATAAGCTCAGGCTCTGCACTTCAGAGGTACTTTAGACTCCTGATTGGTTGAAAATCAAAGAATTTACAGAAAGTTACACATTATGAGAAACACATCTACATACAATCTAAAGTTAGAAtacttataaaaaataatacaataatcaTGTGCTAACACTTAGCGCAATTATAATGCATTGTAGGGAGTCGTATAAAGTCTTATAAAACATCTGTAATGTCTAATAATACAGCCGCTTATCATTGGTTATAATTGGGATGTGAGGGCAAACTCCATGTAGATAAACGCAGATGGAAGTTGTATTTCAGAGCGGAAAGCaaattgttttcatttgtaAGGGCAAACCTAATAACTGCTTGtgaaatattcattatatttaatatctcTGAATTATAGCTACTAGCGAAAAAGCCAAATTATGTCAAGTCTAATTGAGAAAAACTATAAGAAACAATTTCCAGAATTTAGTTACATGCTTTTAGTTTGGGAATATATTAGTATAgttataagtatatatatatatatacaagtgTAGTTTCAAATCACTTCCAAGTAGCCACTATTCTAAAACAATATCGATGGTTTAGAAGCCTTTATATGAgattaattaatgcattataattgCAAGTGTTTCTTACACCTATTTGCTGCACACTGAGTGACAgtgtttttgtctcatttcaaaACAGATATGTCAtatgacctaaaaaaaaaaaaaaacctgtgcaaCCGACGGCATTCTGGTCTGTGGTCATAAGTGGGAACCATTTTTCAGCTCTACATGGTCCCTGTTTCCATTTTCCAGTTTCCGTCTACTATAAAATTTCCCATCACGTTGAGGCAGCAGTGTTTGTTTAAATTGGAACGGTACCAATcatatctctttctctccttctctattttctccccctctcttACGGACCAGTTCCCTCTCACACAGCTTCAGATTTTCAGATTTGCTACGTTTTCCTCaaaccacacacaaacccaaTTCCCTTTCAATTCCATGTTTTAAAACTATTTGTACAGTTTGTCCAGCAGGTGTTGCCAGAGAGACACTGTTTGCTGCTGGTTCTGTCTTCTCCGCTCTCCATCGATGTGTATCCGTTCCGTCACTAGGACACCTGCTCCACGGGCCGCAGCTGCACATCTCCGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453180 lncRNA upstream 2931 6575979 ~ 6576182 (+) True G382205
TU453119 lncRNA upstream 28309 6549802 ~ 6550804 (+) True G382148
TU453117 lncRNA upstream 41882 6537031 ~ 6537231 (+) True G382146
TU453109 lncRNA upstream 65943 6502015 ~ 6513170 (+) True G382138
TU453091 lncRNA upstream 126538 6452363 ~ 6452575 (+) True G382122
TU453261 lncRNA downstream 86029 6666639 ~ 6668385 (+) True G382257
TU453282 lncRNA downstream 226569 6807179 ~ 6809541 (+) True G382274
TU453300 lncRNA downstream 229743 6810353 ~ 6810567 (+) True G382292
XR_004577428.1 lncRNA downstream 230508 6811118 ~ 6815375 (+) True LOC117596241
TU453360 lncRNA downstream 371109 6951719 ~ 6954928 (+) True G382351
XM_034300454.1 mRNA upstream 33378 6537778 ~ 6545735 (+) True tbx16l
XM_026921474.2 mRNA upstream 46219 6522164 ~ 6532894 (+) True eral1
XM_034300947.1 mRNA upstream 127680 6436800 ~ 6451433 (+) True LOC113531597
XM_026922287.2 mRNA upstream 147111 6415403 ~ 6432002 (+) True LOC113531512
XM_026922288.2 mRNA upstream 164933 6408024 ~ 6414180 (+) True shpk
XM_026921928.2 mRNA downstream 53360 6633970 ~ 6653902 (+) True LOC113531298
XM_026921929.2 mRNA downstream 77443 6658053 ~ 6662250 (+) True c1qbp
XM_026921478.2 mRNA downstream 88322 6668932 ~ 6687976 (+) True LOC113531024
XM_026922170.2 mRNA downstream 110426 6691036 ~ 6773907 (+) True srrm3
XM_026921457.2 mRNA downstream 197382 6777992 ~ 6784388 (+) True hspb1
TU452818 other upstream 195453 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 336416 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 398200 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 527216 5990022 ~ 6051897 (+) False zmp:0000001168
XR_004577432.1 other downstream 381600 6962210 ~ 7058199 (+) False LOC113531592
XR_003403276.1 other downstream 696235 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 696989 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1562001 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1601781 8182391 ~ 8213107 (+) True G383217

Expression Profile