RNA id: TU453300


Basic Information

Item Value
RNA id TU453300
length 215
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G382292
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6810353 ~ 6810567 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ataaaaacaCTTTCTGATTACCCATCTATTCGTATTTTGAGTATTTTAGGGTTTAGCCAAAACTTTTATAGTGATGTGAATAATGAATGTCCCAGCATCTCCACAATGCAATGGCAAGCATGACTAGCATAACATACTTGCATATTAAATATCTTAATATTGtatataggaaaaaaatagGGGATAACAGTTTGTATTTCCATTGTGTATCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453282 lncRNA upstream 812 6807179 ~ 6809541 (+) True G382274
TU453261 lncRNA upstream 141968 6666639 ~ 6668385 (+) True G382257
TU453190 lncRNA upstream 229743 6579113 ~ 6580610 (+) True G382207
TU453180 lncRNA upstream 234171 6575979 ~ 6576182 (+) True G382205
TU453119 lncRNA upstream 259549 6549802 ~ 6550804 (+) True G382148
XR_004577428.1 lncRNA downstream 551 6811118 ~ 6815375 (+) True LOC117596241
TU453360 lncRNA downstream 141152 6951719 ~ 6954928 (+) True G382351
TU453390 lncRNA downstream 256246 7066813 ~ 7067761 (+) True G382380
TU453632 lncRNA downstream 298159 7108726 ~ 7109709 (+) True G382606
XR_004577398.1 lncRNA downstream 344027 7154594 ~ 7157229 (+) True LOC117596228
XM_026921457.2 mRNA upstream 25965 6777992 ~ 6784388 (+) True hspb1
XM_026922170.2 mRNA upstream 36446 6691036 ~ 6773907 (+) True srrm3
XM_026921478.2 mRNA upstream 122377 6668932 ~ 6687976 (+) True LOC113531024
XM_026921929.2 mRNA upstream 148103 6658053 ~ 6662250 (+) True c1qbp
XM_026921928.2 mRNA upstream 156451 6633970 ~ 6653902 (+) True LOC113531298
XM_026921613.2 mRNA downstream 21117 6831684 ~ 6931919 (+) True LOC113531112
XM_026922413.2 mRNA downstream 151643 6962210 ~ 7058199 (+) True LOC113531592
XM_026922414.2 mRNA downstream 151643 6962210 ~ 7058199 (+) False LOC113531592
XM_034300569.1 mRNA downstream 269540 7080107 ~ 7149766 (+) False mtmr4
XM_034300570.1 mRNA downstream 277191 7087758 ~ 7149766 (+) False mtmr4
TU452818 other upstream 426693 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 567656 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 629440 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 758456 5990022 ~ 6051897 (+) False zmp:0000001168
XR_004577432.1 other downstream 151643 6962210 ~ 7058199 (+) False LOC113531592
XR_003403276.1 other downstream 466278 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 467032 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1332044 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1371824 8182391 ~ 8213107 (+) True G383217

Expression Profile