RNA id: TU453390


Basic Information

Item Value
RNA id TU453390
length 895
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G382380
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7066813 ~ 7067761 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acttCAGAATTTCAGGACAAGTTCATTAATTATGCATAGTAATGATTAAGTATATTACACAGAAGCACACAGATTTTATAGAGGATATATGACAATCAAGAATGAGAGGATATACCTTCATTTCCAGGATTTAGAGGAGACGCAAATTCAAATATAATCTGTGGAAAAGGTTATGAGTAAATATGCATTTGATACTGAATTATCCATATCTTTTCATAAGTTACTCACCTCTACAGCTTACCTTGTTAGTTATAGTTTGAGTTTTTTTGATAGTGACTGATGCTTTTAAGCGTCAGCTTTATAAGGAacatctctctttcattcttatATTGAGTCAAACTCTGTGCATTATGTGAATGGTGTTTGTGTCTTTGTCCATACACACACCTTGTCCTGTCTGATGACGTGGGACACCAGCTCTCTGCTACCTGTCTCCAAGCCTTTATAGGCCAGAGGCTCAAAGCCCATCTTATCACAGTAGAAGACTGCCGCCTAGAGGAGCACACAGGTAAACCTGGAAGTTTCAGCAGTTGTCATTTTCGTTCATTTTCTGTTCTATGAGTCTCTGATGGgacatggtggttattttttacTCAGGCATGGCCACAAATTAAAATACTGAAGCCACAACTTAATATTTTGAGGCCACATACTAAGTATCTCATTGTGTAGCTTGAGCTCATAATTTAATGTGTTGTGGAAAGTTATACTTGTCAATTATTTGTGTTGACCTTGACAATTGAATGTTATACCAATGTATCAACACCCATGGCTCCACTATGTCTTTATGTATCATTCTAAGATTGAAGTGTAATATTATTAGTTATTGCCATGCTTATGGTCATGTGGCCACAATGGTCTGATTCAATTGATTTCTTTGAGTTTcacttaattt

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453360 lncRNA upstream 111885 6951719 ~ 6954928 (+) True G382351
XR_004577428.1 lncRNA upstream 251438 6811118 ~ 6815375 (+) True LOC117596241
TU453300 lncRNA upstream 256246 6810353 ~ 6810567 (+) True G382292
TU453282 lncRNA upstream 257272 6807179 ~ 6809541 (+) True G382274
TU453261 lncRNA upstream 398428 6666639 ~ 6668385 (+) True G382257
TU453632 lncRNA downstream 40965 7108726 ~ 7109709 (+) True G382606
XR_004577398.1 lncRNA downstream 86833 7154594 ~ 7157229 (+) True LOC117596228
XR_004577397.1 lncRNA downstream 86833 7154594 ~ 7157229 (+) False LOC117596228
TU453653 lncRNA downstream 192492 7260253 ~ 7261090 (+) True LOC113531088
TU453677 lncRNA downstream 318749 7386510 ~ 7388236 (+) True G382646
XM_026922413.2 mRNA upstream 8614 6962210 ~ 7058199 (+) True LOC113531592
XM_026922414.2 mRNA upstream 8614 6962210 ~ 7058199 (+) False LOC113531592
XM_026921613.2 mRNA upstream 134894 6831684 ~ 6931919 (+) True LOC113531112
XM_026921457.2 mRNA upstream 282425 6777992 ~ 6784388 (+) True hspb1
XM_026922170.2 mRNA upstream 292906 6691036 ~ 6773907 (+) True srrm3
XM_034300569.1 mRNA downstream 12346 7080107 ~ 7149766 (+) False mtmr4
XM_034300570.1 mRNA downstream 19997 7087758 ~ 7149766 (+) False mtmr4
XM_034300568.1 mRNA downstream 22355 7090116 ~ 7149766 (+) False mtmr4
XM_026921459.2 mRNA downstream 32481 7100242 ~ 7149766 (+) True mtmr4
XM_034300567.1 mRNA downstream 46215 7113976 ~ 7149766 (+) False mtmr4
XR_004577432.1 other upstream 8614 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 683153 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 824116 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 885900 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 1014916 5990022 ~ 6051897 (+) False zmp:0000001168
XR_003403276.1 other downstream 209084 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 209838 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1074850 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1114630 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1522606 8590367 ~ 8591155 (+) False gig2o

Expression Profile