RNA id: TU453632


Basic Information

Item Value
RNA id TU453632
length 946
lncRNA type intronic
GC content 0.38
exon number 2
gene id G382606
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7108726 ~ 7109709 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAATTATTTTCTCACTGCAGATTTTTCAAATCTCATGCCTGGAAATATAAAAACCCTCCTTAGTGAGAAGCTTGCCCCTCCCAATAATATCATGACTAGACACTGGGTTTAGATTCAGTTAATAGAGTTATTTTGGATGCAGGTTTGAGAGCTTTCTGTctgtgaaataatgaaataatgtgtgTAGTTTAAAGCTGATCAAGACAGCCGATGCAGCACTTTGAGTACAGCTGTGTGAATATGCATGCAGTGTGGATGTGACCATTCATTACACTAAATATCAAGACTCCTTCTCATTGTGTGTACTTTGAGTCTATCGTCTGGTAGGGTATAGCAGGACATCACAGCCCTGAGTtggttatagaaaaaaaaaattaagaaaaattcttaaaggaaaactccatcctgaaacacatgaaataatgtttatattgGAATATTTGTGGCGTCCTTAGTGGTTGTGGTGGTTGCTGCTGTATTTTCGGTATTCTTGTGAGAAGGTAGCGGTTCTCTAGCGTGGTGACGTCACAGAGGGACATTGTTTGAACACaactgtaactgtgctagcaatagCAGTGAGCTATCACAGgttttccagtgatgttcagTGTCATATTCATGAGAAATGCAGCGTAGaaatagtggagacagcaaacactGAACTCAAAGGTCCAGAATGCATTGCTGCTATATGGTTGactatataactataattatataGCAGctttggaagctgatctggaGGTGAGAGAGATGGATCAAGCGAGCTGGATCAAGCAACGGCTAAATACAACTGGCGctactatcagcaggtagttgaacggcattgtgggtcaTGTAGGAAAGCATTGTGAGCAAGTTTGATGAAAGACATTTGAATTAAATGTGTAAACTTTAATAAGATGTAGATGTACAATTTAGTTTTTAAGAAAaccttaattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453390 lncRNA upstream 40965 7066813 ~ 7067761 (+) True G382380
TU453360 lncRNA upstream 153798 6951719 ~ 6954928 (+) True G382351
XR_004577428.1 lncRNA upstream 293351 6811118 ~ 6815375 (+) True LOC117596241
TU453300 lncRNA upstream 298159 6810353 ~ 6810567 (+) True G382292
TU453282 lncRNA upstream 299185 6807179 ~ 6809541 (+) True G382274
XR_004577398.1 lncRNA downstream 44885 7154594 ~ 7157229 (+) True LOC117596228
XR_004577397.1 lncRNA downstream 44885 7154594 ~ 7157229 (+) False LOC117596228
TU453653 lncRNA downstream 150544 7260253 ~ 7261090 (+) True LOC113531088
TU453677 lncRNA downstream 276801 7386510 ~ 7388236 (+) True G382646
TU453699 lncRNA downstream 339202 7448911 ~ 7450445 (+) True G382667
XM_026922413.2 mRNA upstream 50527 6962210 ~ 7058199 (+) True LOC113531592
XM_026922414.2 mRNA upstream 50527 6962210 ~ 7058199 (+) False LOC113531592
XM_026921613.2 mRNA upstream 176807 6831684 ~ 6931919 (+) True LOC113531112
XM_026921457.2 mRNA upstream 324338 6777992 ~ 6784388 (+) True hspb1
XM_026922170.2 mRNA upstream 334819 6691036 ~ 6773907 (+) True srrm3
XM_034300567.1 mRNA downstream 4267 7113976 ~ 7149766 (+) False mtmr4
XM_034300572.1 mRNA downstream 53590 7163299 ~ 7179897 (+) False ca4a
XM_026921688.2 mRNA downstream 53592 7163301 ~ 7179897 (+) True ca4a
XM_034300571.1 mRNA downstream 115001 7224710 ~ 7238694 (+) True gusb
XM_034300495.1 mRNA downstream 150546 7260255 ~ 7260867 (+) False LOC113531088
XR_004577432.1 other upstream 50527 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 725066 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 866029 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 927813 6177804 ~ 6180913 (+) True G381835
XR_003403255.2 other upstream 1056829 5990023 ~ 6051897 (+) False zmp:0000001168
XR_003403276.1 other downstream 167136 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 167890 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1032902 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1072682 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1480658 8590367 ~ 8591155 (+) False gig2o

Expression Profile