RNA id: TU453653


Basic Information

Item Value
RNA id TU453653
length 575
lncRNA type sense_over
GC content 0.49
exon number 2
gene id LOC113531088
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7260253 ~ 7261090 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGACATCATCTGTTGTTTACGCACAGAAGAGAGAGAGCTTGTTGAGGCGCGTGAAAGGTGACTTTtctgtgaaaagaaagaaaaaatggccACTGACATTGAAAGGTTGGCTTTGTTTGAAGAGGCGCACTATGACCAGTATGATTATTATAACCTGGATGAATATTCGTGCCATGCTGGAGGAAAAGGAAGAACGAAGAAAGAAATCGGATTAAACACCAACCGCCATTGTCCTGCAGGACATGAGAGAAAAATCGCTGAAAAATACCGGAATAGCGAAGTGAAGAGGAAGAGATCCAAAAGCTCTTCGTCTTGAACGATGTATAATTGAGCCAGGAATGCCCCCACTGGAGATGACTTGAGAAGCGGATCGTGGTCCTAATGTCTGTTAAACCTTTTCCTGCCTTGTTGAACGAGAACGCGCGCACGCGCCACTGACGCACCTGAAGCCACGGCCTTTTCCTGCCTCGTGAGCGCGCATCCCGATTCCGCGTTTCCGTGTTTCCGCCTCTGGAAGCGGATCTGTCCACTGGAGTCAGGTTGCAGCTGCGCACACGAATAGCCTTGTTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577398.1 lncRNA upstream 103024 7154594 ~ 7157229 (+) True LOC117596228
XR_004577397.1 lncRNA upstream 103024 7154594 ~ 7157229 (+) False LOC117596228
TU453632 lncRNA upstream 150544 7108726 ~ 7109709 (+) True G382606
TU453390 lncRNA upstream 192492 7066813 ~ 7067761 (+) True G382380
TU453360 lncRNA upstream 305325 6951719 ~ 6954928 (+) True G382351
TU453677 lncRNA downstream 125420 7386510 ~ 7388236 (+) True G382646
TU453699 lncRNA downstream 187821 7448911 ~ 7450445 (+) True G382667
TU453724 lncRNA downstream 236676 7497766 ~ 7500585 (+) True G382686
TU453732 lncRNA downstream 277324 7538414 ~ 7544086 (+) False dpm2
TU454007 lncRNA downstream 385046 7646136 ~ 7646471 (+) True G382929
XM_034300571.1 mRNA upstream 21559 7224710 ~ 7238694 (+) True gusb
XM_034300572.1 mRNA upstream 80356 7163299 ~ 7179897 (+) False ca4a
XM_026921688.2 mRNA upstream 80356 7163301 ~ 7179897 (+) True ca4a
XM_034300569.1 mRNA upstream 110487 7080107 ~ 7149766 (+) False mtmr4
XM_026922341.2 mRNA downstream 14464 7275554 ~ 7279408 (+) True rplp0
XM_026922294.2 mRNA downstream 18556 7279646 ~ 7291137 (+) True LOC113531518
XM_026921954.2 mRNA downstream 34139 7295229 ~ 7383384 (+) True cita
XM_026921957.2 mRNA downstream 34139 7295229 ~ 7383384 (+) False cita
XM_026921956.2 mRNA downstream 34139 7295229 ~ 7383384 (+) False cita
XR_004577432.1 other upstream 202054 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 876593 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 1017556 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 1079340 6177804 ~ 6180913 (+) True G381835
XR_003403255.2 other upstream 1208356 5990023 ~ 6051897 (+) False zmp:0000001168
XR_003403276.1 other downstream 15755 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 16509 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 881521 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 921301 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1329277 8590367 ~ 8591155 (+) False gig2o

Expression Profile