RNA id: TU453724


Basic Information

Item Value
RNA id TU453724
length 2742
lncRNA type intronic
GC content 0.37
exon number 2
gene id G382686
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7497766 ~ 7500585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACCCATGATATCTCAGGAATTGTGATGAACTAACGGCTGTAACACAGATGGAAGGCGTCCCGATTCAGTTTTATGAATTACTGAAAGTCTCACTTTTACATGGAAAATGTGAACATAGCAGTGTGGTATCAAATCTGACCAAATCATCAGCCATCCAAGAGGAGTTATCTGTTTAAAACCCACTTTAACAAATCCTGGAAACAGAACAGGCGTTAAATGACCTAAATGTTTTGGTtatgttaaactttagctgtttaaaaatgtctgcGATACTTAAATCGAAACAGCTGGAATTCTTCTGAAGAGACGGACGATTTGCAAATTCTGATCTCTGCTGCGTTGTTTAGCAGGCTgctgtgtttcttttcttccctctctttccttccttccttctttctttctttctttctttctttctctgtaatatgGGACTGTTATTATTCtgcataaagaaagaaacattgaTAGAGCCCGGGAATCCGAGTCTGGAAGAGAGCACCAAAAAGAAGTAGGTTAAACGTAGTCCTGGGGGAataggaggagagaggaggcgAAGGCACAACTTTTTGACTCTTCTTACAAGTGAACAGTATTCTTGTTACTGTTAAAATAGTTCCATTTCAAAGCATCATGCTTGAGCGGAGAAACTGCTTATATTTTAAGCGACCCAGGTAGTGTGGAGGAATATAGCTCCAAGCCTGcaaacaaagacagacagaactCTTCCTCCTGTTGTGTCTTTACTTGCAACTTTTGCTCAGTCACAGGTTGTGCAAAGGTCAAGGTTCACAGGTCAAATTGACAAAGTATTCCACGTCCCGAGTGTTGGTTTATTGAGCTGCAGATGTGGAGTCGACTCTCAGTTAACCCTCTCTACCCTTCCCCCATTCCGCACTTCCAGAACCagtttaaaggaatactccggCATTGTTCAACGTAAactctatccactgtatgtgtAACGTATATACAATTTCCACAGACAAGAATCTCAAAATATTTCCTggcactgagagagaaaaacagaaaatgtcttGAGTCCAAACTCTCTAATAatagaagtctaagggcagttgttgaattctgtcAATAAATGATTATCCAAAGGACAATTTTGTAGAACGTTTTTATGAATTATTGATCTAAATCTGTATGTCATCAATCAATTGTCTGATGATATATGAATACTATTTATACGGTGTTACCTCAGTGTTAGAAGGTTTCATCGATataatgttttcttcttcttttattttttatatattttttattttttgccagtATGAGTGTATGTTTTTTGGTACTTGTCCATACCATACCGAACTTAGTATTACTCGTTTTATATAGCTCTGTTTgcttttttatcagtttaaatAGTTGCTATGAAAAGTGCACACATGCATGTAAAAGTGCTTAGGATACTAGGCTCGTTCTTTATAACGTTAGCTAGTTGatttttagctagctacagtAGTTAGgtagggttgcagtggagaGTGGGTTTTGTGTGATTTCAGTTCAGCTGTAAGtacttttttgtgtttgcttgtttgttttttttgttttcattgtgtcAGAACGACCAATAGCAGCTGATCATcaaagaacaacatactgggtaaGAGCCGGTATTGTCTTCCTTCACCATTGATTTATGTTGTTAGTGTAGCAGTTGTAGTTTTGAATTTTCATCCTGTTGTCGCATAGATTAAAGTTTATTAATGGAGTTCAACACCTGCCCCTAGATATCTAACATATAACATTATATCTAACATAAGTGAGTTTCAAGTTAACAGgtttttctgttatttctttattccagaaattgttttgaaattattattcatGTTATTCACATATAAAACTCAGATCTAGTTGATAGTGATtaggttggaaaaaaaaaatgttcgaGTATTCCTTTAAAGGTCTGTCTTTATAAGGGTGAAAAGGTGAAGTGTGTGCTTTGAAAATGCATGAGTAAATATTAGTGTGTTACTGTCGTAATACAAATTCAGCTGTCGATGTTTAATAGGATCAAAGTTAGCAAGGATTCTGTTAGCTTAATTAAGTTTATGTGAGTATTAACCTTCTATTTTGCTTGGAGAAATATAAATCCTGAAATCTTTGTTCCAGTAACTTACAAGCGTGTGTTCTTGTGGatgagtgggtgtgtgagagatcGTTGCTTATGATTGCTATGCTCATAAAATAAAACCCTTGTTCCTGTGACTCAAACCACTGTTAAATCTGTGGATTATTTATCATGAGTTTGTGTTTGTCATGGGTGGTTGTGGGAGAGAGTTTCAGAATGAAACTACTATTGGGACAGTTGGGAAATTTTAAATAAGATTTGTATGACATTGAAAGAGGAAAGGGCCAGAGTGCATATTTCCCATGGGGAGGCGAAGAGATTTAGTTAATAACGAATGAACTTGTATGGTAGGCAGGTTCAGACTTCTCGGATTACTAAAATGCCGTATGCAACTATTGTCCTTGTTGTGTGACACTTAAGCAGCATTGCGTAAAGTAAATACATCAAGCAAGACTGGAAAGTTTCCAGCCAGCATTTCGATTTCCGCCAGCTTTCCCTGATTTCATGGATTCATGTTTTTCATCGCCTGTGTGATCACAATCGCAGTGCCAGATCAGTGTGTTTACTCTCAAGgaggggaatttttttttttttttttttttttttttctgttctcttctttGCTCCAGATCCTGATCAGGGAGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453699 lncRNA upstream 47321 7448911 ~ 7450445 (+) True G382667
TU453677 lncRNA upstream 109530 7386510 ~ 7388236 (+) True G382646
TU453653 lncRNA upstream 236676 7260253 ~ 7261090 (+) True LOC113531088
XR_004577398.1 lncRNA upstream 340537 7154594 ~ 7157229 (+) True LOC117596228
XR_004577397.1 lncRNA upstream 340537 7154594 ~ 7157229 (+) False LOC117596228
TU453732 lncRNA downstream 37829 7538414 ~ 7544086 (+) False dpm2
TU454007 lncRNA downstream 145551 7646136 ~ 7646471 (+) True G382929
TU454009 lncRNA downstream 148724 7649309 ~ 7649523 (+) True G382931
TU454010 lncRNA downstream 149036 7649621 ~ 7650073 (+) True G382932
TU454022 lncRNA downstream 162282 7662867 ~ 7665688 (+) True G382942
XM_026921495.2 mRNA upstream 63746 7412105 ~ 7434020 (+) False pkn3
XM_026921497.2 mRNA upstream 63746 7418272 ~ 7434020 (+) True pkn3
XM_026921959.2 mRNA upstream 115928 7295229 ~ 7381838 (+) False cita
XM_026922257.2 mRNA downstream 37773 7538358 ~ 7544114 (+) True dpm2
XM_026921559.2 mRNA downstream 45875 7546460 ~ 7563680 (+) False pip5kl1
XM_026921560.2 mRNA downstream 45884 7546469 ~ 7563680 (+) True pip5kl1
XM_026921562.2 mRNA downstream 45884 7546469 ~ 7562586 (+) False pip5kl1
XM_034300487.1 mRNA downstream 46499 7547084 ~ 7563680 (+) False pip5kl1
XR_003403275.1 other upstream 220039 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 220793 7276845 ~ 7276973 (+) True LOC113531674
XR_004577432.1 other upstream 439567 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 1114106 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 1255069 6223168 ~ 6242697 (+) True G381893
TU454294 other downstream 642026 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 681806 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1089782 8590367 ~ 8591155 (+) False gig2o
TU454806 other downstream 1264317 8764902 ~ 8775134 (+) True G383625
XR_003403287.2 other downstream 1867904 9368489 ~ 9368564 (+) True LOC113531685

Expression Profile