RNA id: TU454022


Basic Information

Item Value
RNA id TU454022
length 2822
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G382942
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7662867 ~ 7665688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcaaatctgaaatATGGaaagctgtgtttgttttgtcttattaaaagcttatcacagctataatgtaagtgaaaacaggaactaactaactagacaatgcacaacattaaatctaactataaattGACAAAATGGacgatgtgtcattcattaataaatgaaacattgtaatcgttggcaaataagtggaataacacactccagaccgcAGTATTATACAAAAACAATGCAACTTCAGCATACGCCTGCAATGATTAATGTTTATTCAATCTATGATGAAACAAATAcagagcacatttttaaaattttgacaaTTAACACTGAGCGTCAGGAAGAGCATCCggcattaaacaaacaaaaaaaagtgccaaatcaaatatgtagattaatgatccactgtggcaacccctaatgggagcagccaaaagaagaagaagtgtgatctTATAAATGCATTAGTGTTTACCACAGAACACAAGCAAATCCTTGGTATGTTAACATACCATGTTACTAGCAGAAGTTGTGACTGAAACGACATTCTTTTGATTCTGGAATGGATTGGCGTCCAATTCAGAGTGTATTCAAGCCTCCTGCCCTGTGTCCCCGGGATACACTCAGGATCCACCggaaccctgatcaggataaagcgcttactcaAGATGAAAGAAGAAGATGCAAATGTAATACCTAAATACAAAACAGCCCCTATTTGCTTAATAATCGAAACATTACCAGGATATCGCTGGCAACAAGGAGACACGTAAATGAATCTATGATGAGATTCATAATTACTTGGGCtaaaaatgacacacaaaaCAGCCAATTCTCTTTGGTACTGTAATGTGGTGAAAACTACTTAATAAGTTTTCTAGTACTGAGTATTTTGGGTGGAAAAAATCATGGCATCAAGTCCATAACTGTCTGGTAAATAACTATAGAATTTAACGCAATAAGAGGGAGTAAACTACAGATACAAACATTCAATCTGCTAAGAAAGAAAGCCTAATATGCCACTGCCTTGAATATTACAGAAACAACCAATAGTGGATGCTAAAGCGCATACTTCACGAGGCCAATTTTTGATCAATGAGATGTTTGCAATTACACTggatgtgtatatttattataatttccaGATGgatgaattaatttttaatcaacTTCCTTCCTTCTACACTTACATTCTGTAAATTTCGATGCTCTCAATACAACCGAGACTTAATGCAAGTGCTGATATAAAGGCAAAGGGACATGTCTTAACTTGCCTAAACATGACGTGATTAGTACAACTAGTGGCGAAAAGGTCACAGTCACTGACAAAAGTAGCAGTCCCACTCAATATAAACTGATGATGACTGATGACAAATAATGTACTGTTGTGTGAAGTTAGAGCAGGTGTTTTATTATGATTCACACACTACTTTCAGGTAACTTCAGTCACCTACAGTTTCATTTGCAAtcggaagaaaaaaaatggggtGTTGGGTGATTTTCTGCTGAAATAAGTAACAGAGTCTGCATCTTTTCCACTTCAATTGTTATTGTATAATCCAAAATGACTCTCACTGGGTACGGTTAATCTACTACTTCCTAATCCATGATGAGATTCACAATTAATTGTGAAATTAAGAGCTACGCAGTTCAGTTTTGTTCATTCTGGTCCAACATCTGGTCTAGCATTCACACAATCATGTGTGCCAAGTCTGGTCAGTATTGTTAAGTAGCAAAATGTAATTGCATGTACGTAGAAGTGGGTCATGAATAAACTACAGATAATTATGAAGCCCCTTAAGAGTGCGGAGTACTAGAGCCGGGAAAACACCAAGCTGAGCTAGCTGACCACTACAACATTAGACACCAGTTTATCATGGGACTCAAAGTGATTacataatcatattttaaatccAATTTCTATTTCTCGTGATAGCTCAAGATAGTCACATTAAGTACATGGCAACAATATAGCTATTAAATTGtacgttttttttatttaagagcaGAGTGACAGATTGTACATATGGCTTACCATCATTCACTTCTACATACATATTATTTGATATTGCTGATATGATATCTGTTTCACAGCTTTCCACACTCTCACTTACGAATGACGATACGACATTGTGGCTTTCTGTTGCACACCACAGTGTCTATATCAAAACATGTTCAGAATCACATCACGTAGTTCTGATTTACCGTTAAGAAACACTGCTGTCTGCTATCTGTTGATAACCCATCTATGCGtaacaaacattaacacacaaacgcattaattttgttttaaatatactgGTAGGTTACGTTAGGACTACTCATTTTTTGAGATTGCATAACGGTGATGCAAAATCAGTTTTGTGCAATACTGCAGAGAAAGGGAAGCTTGAATGCCTTACTAGAATTACTGACTAATCACATTTCAGAATTTTACTTGTGTCTAATAAGTCAGTCATCTTATAAGGCAgtgcactgacactgacaccaTTTGTGATCAGCTTcaaagaaagaatttttcaCCACATTACCAGGATACCGGCATTACCATACTCATGAAATCTGTTAGTCAAGATTGAATAAAGTATCACTGGgataaaacagaacaaatattCTGACATTATTGTCATTTCTCGCTTGAAGTGGAAActtaacacaaaaaacaaaaagcttatTTGTGCACAGAATGCACCCCCCTTCCTCAGTGTGGTTTTTAAATGGGTTGGCTGATACACACAGTCACATCAGATATACAGGACAGTGAATGACGTGTCTAAGCTCCCTTAAAAAATATCGGCCAGATAAACGGACCTCAGAAGGCAGCATTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454010 lncRNA upstream 12794 7649621 ~ 7650073 (+) True G382932
TU454009 lncRNA upstream 13344 7649309 ~ 7649523 (+) True G382931
TU454007 lncRNA upstream 16396 7646136 ~ 7646471 (+) True G382929
TU453732 lncRNA upstream 118781 7538414 ~ 7544086 (+) False dpm2
TU453724 lncRNA upstream 162282 7497766 ~ 7500585 (+) True G382686
TU454164 lncRNA downstream 239646 7905334 ~ 7909226 (+) True G383067
TU454229 lncRNA downstream 319924 7985612 ~ 7986368 (+) True G383128
TU454245 lncRNA downstream 357305 8022993 ~ 8107472 (+) True G383143
TU454323 lncRNA downstream 458955 8124643 ~ 8125748 (+) True G383208
TU454293 lncRNA downstream 496412 8162100 ~ 8163700 (+) True G383181
XM_026921878.2 mRNA upstream 42535 7617979 ~ 7620332 (+) True LOC113531275
XM_026921871.2 mRNA upstream 59538 7565791 ~ 7603329 (+) False sh3glb2b
XM_026921527.2 mRNA downstream 105210 7770898 ~ 7797351 (+) True p2rx1
XM_026921529.2 mRNA downstream 105210 7770898 ~ 7797351 (+) False p2rx1
XM_026922291.2 mRNA downstream 434159 8099847 ~ 8104105 (+) True LOC113531515
XM_026921471.2 mRNA downstream 476895 8142583 ~ 8161257 (+) True spns3
XM_026921472.2 mRNA downstream 476898 8142586 ~ 8161257 (+) False spns3
XR_003403275.1 other upstream 385140 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 385894 7276845 ~ 7276973 (+) True LOC113531674
XR_004577432.1 other upstream 604668 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 1279207 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 1420170 6223168 ~ 6242697 (+) True G381893
TU454294 other downstream 476923 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 516703 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 924679 8590367 ~ 8591155 (+) False gig2o
TU454806 other downstream 1099214 8764902 ~ 8775134 (+) True G383625
XR_003403287.2 other downstream 1702801 9368489 ~ 9368564 (+) True LOC113531685

Expression Profile