RNA id: XM_026922081.2


Basic Information

Item Value
RNA id XM_026922081.2
length 1943
RNA type mRNA
GC content 0.43
exon number 2
gene id gig2o
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8590310 ~ 8592381 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTTCAGGTATTTCCTGGTTGGCATTGCGCTTACACTAAACTGAAAGCAAATAACAAGGGCGTCGAGAAAACAAGGAAGAACAGAGCTCATGGACGGCGCTGTGAGTTTTGCAGGCTGGCGCGCTGTAGAAGACAGCAAGACACTTTCAGAGGATGAAGAGCCGAAATCGGGCCGTGTGTACACCATGTACCATGGCACACACATCGACAACGCTGAAGACATCATCGTCAACGGCTTCAAGCCGTCCACACGCGGAATGCTGGGGAAAGGCGTGTACGTGAGCCGCAATATCAAGAAGGCCCGGTGCTACCCGCTCCGAACCGACAAGCGCGACCAGGTCGTGTTCAAGCTCAAGGTCAGCGTCggcaaagtgaaaaaaatcgACTGCGACAACCATCCACTGCGCGCGACCTGGCACGACGACGGCTACGACTGCGCCTGGGTGCCTCCACGCAGCAATATCTCTGCGATCAAATCCGGACGAGAGGAGGACTGCGTGTGGGACCCGACACGCATCACTGTGGTCGACGTGGCGTGTTGCGTGGATGAGGGGAAACGACGCAAGCTGCGTAATCTCATCCGCAGCCACGTGCGCAGCGACGAGTACCCCTCATGCCGCCAGAGCTCTCCGGACTTACCGCACGACGTGCGGGACTGCTGGGCATGCGGGAGCAGGATTTGTCCGTTTGAAAAAGAGCATGTGTGTATGACGCAGTAACATATCCGGTGAAAGTTCCCTACATCCGGTCCTGGAGGTCCAGCACAGTGAGGTATGCTGAACTGAGGGCCTCCCAGGGCTGGATCTGGGGAACTCTGCactgtcagtaaaaaaaaaaaaaaaaaaagtactaccTTTCCTTGTCGCTTAGGTGGTTCTCTCAAGATTACACTAAAAGTTTTACATTAAAacctatttatccatttatgtaccataaatacttttaaatatacactatatccaTGTTCCCATGTGACAGAGACATattcacagtaaaaaaaaaaaaaagatatatccTAAGGTCCTGTATCATAGATAAGGAAAGGTAGAGTttaacagcctttttttttttttttctgagaatgtgGGTAGTCAGTCACTGTGGCCTATGCAGCTCAGACAGTTACGGCTGTTTACATGTCAGACTCAGCTGATAAAAAACATGAAGAGTTCTTCTGTGACACACcatttatacataatatattttctATACAATAGGGTAGAATTTTCTTTGTCTGTGGTGGTCAGTGTCTTTTTACCTTTGAAAGTTTCTCTTATTCGTCTTATatctatgttttatttatgttgttaTAATTAATGAGATGACTAATCACTGTGTTAACTAACCTAATTAAAACATAACCTATAGCCTAGAGATGTAGAGGTGTGCATAAGGACCAGAATCCCACAATATGCAACAAAAATTCACTCAAGTGGAAGAGTTTTGCTTTCATACTTTCGTACTTGCTAAGATCATGGTACAAAGATTTATGAATAGGAGACACACAGTTCTTTTTTGTCTATCATCAGTGGTTTGCTCCAGTAGCCCGACCTAAATACTGGCTTTGTCACATATTTTTACCATATTTTTGTACAAACTGGCCCgaaatgcacaaaataaatatgcttttatttactgtaaagtgCCTGGTCCATAGCGCAGTATGCACAGGGCAGCATATCTCTGCTGGGTGTCCAaaaatacttatttaattaatttgaaaaatattagcATGTATGTtaattgtgtatgtttttgatTGTTCTTATTTGAACATTCTCtgttgttattaaaagaaaatattcccGGAAAATCTTACAGACGTTATACTGAAATGCAGGACCCTGTTTAGACGAGCAGCAGCATTGCGCCCCAGCTTCATATTAgaatctttctggaatgtaataaacccaaaaactgaagtaaatctgataaaatatta

Function

GO:

id name namespace
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454599 lncRNA upstream 25076 8563592 ~ 8565257 (+) False atf5a
TU454598 lncRNA upstream 33490 8554596 ~ 8556843 (+) True G383448
TU454593 lncRNA upstream 81951 8507216 ~ 8508382 (+) True G383443
TU454533 lncRNA upstream 205830 8384245 ~ 8384503 (+) True G383399
TU454373 lncRNA upstream 234643 8352477 ~ 8355690 (+) True G383256
XR_004577387.1 lncRNA downstream 21922 8614303 ~ 8615355 (+) True LOC117596219
TU454787 lncRNA downstream 145492 8737873 ~ 8738074 (+) True G383609
XR_003403243.2 lncRNA downstream 358411 8950792 ~ 8953176 (+) True LOC113531289
XR_003403240.2 lncRNA downstream 361766 8954147 ~ 8964092 (+) False LOC113531287
TU454867 lncRNA downstream 361790 8954171 ~ 8964359 (+) True LOC113531287
XM_026922071.2 mRNA upstream 25649 8558826 ~ 8564684 (+) True atf5a
XM_026922054.2 mRNA upstream 39799 8495718 ~ 8550534 (+) True phldb1a
XM_026922072.2 mRNA upstream 95983 8481772 ~ 8494350 (+) True arcn1a
XM_026922085.2 mRNA upstream 123326 8466346 ~ 8467007 (+) True LOC113531377
XM_026922064.2 mRNA upstream 125137 8419814 ~ 8465196 (+) True c2cd2l
XM_026921836.2 mRNA downstream 185893 8778274 ~ 8793835 (+) True adamts8a
XM_026921839.2 mRNA downstream 201703 8794084 ~ 8807241 (+) False zbtb44
XM_026921837.2 mRNA downstream 201706 8794087 ~ 8808883 (+) True zbtb44
XM_026921838.2 mRNA downstream 201708 8794089 ~ 8808883 (+) False zbtb44
XM_026922308.2 mRNA downstream 249116 8841497 ~ 8866506 (+) True LOC113531529
TU454332 other upstream 377226 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 445453 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 1312606 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 1313360 7276845 ~ 7276973 (+) True LOC113531674
XR_004577432.1 other upstream 1532134 6962210 ~ 7058199 (+) False LOC113531592
TU454806 other downstream 172521 8764902 ~ 8775134 (+) True G383625
XR_003403287.2 other downstream 776108 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 776450 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 776880 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 778679 9371060 ~ 9371137 (+) True LOC113531672

Expression Profile