RNA id: TU454806


Basic Information

Item Value
RNA id TU454806
length 2191
RNA type TUCP
GC content 0.49
exon number 2
gene id G383625
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8764902 ~ 8775134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAATTATTACATGTCTATCAGGATAGGTTAAAGAAGGTGTGGTTCACCATTAGCAATAGCCAAATTCACAGTCTGATTGATAAAGGTTTACACCCCAGTCTTAGCCACCACAGAAAGTCATATATCAATAAGATCAATAAAACCCAAATCATTATATAGTAACAATGTTCCTGGAAATAGATATTTAAACAGATAACCTGTGCCGCTCTGACTTACCATGTCCGCTGTCCAGGAATTCTGTGATGATAGCAGCACTACACGGTGACCATGGGCTGGTGCGGTTTATCCGGATCAGTGTCGGTGACATCATATGATTGTCCTGTAGCTTTCCAAATACATCCTCACATGCCTTCACGTTATCATGGGGCATGTTGAATACATGGCCTGTGAAGAAAAGAGAATTTTGCAGTCCTTTCACTGTGCCAGTTGTGTCTGAATCATCTGCAAACCTCAGATAAACCAGTTCTGATTTTTTGCACTTAAAATCACCAACACTGCTGCTCTCAGGTAATTATCATGTCAGCAAACAAGCCACAGCTATGTGAATCATGCCTCTAGTACCTCCAGCACATCTAGCAACTCCCCCTCATTTCCTCCACTGGCCTTGTAAATGTACTTTACCAAAACCAGAGATGGAGCTTCCTGCATGGAAATAAGCAACTTCAAATGGGGATCATCGTCTTACCTCGGCTGTTTCCCAAATATCTACAGATGAGCCTTAGGGGGCTTACTTGCTCTTCGGATATTCATTACACTTTTGCAGACAGTAGGTTTCAACAGATTTTCGATACAATTGTCAAGCGATGCCATCTGTTTGAACCATGAAAGCTAATTTGGCACCATACACTACTGATAACATGGTGACTCGGCATGTATACTAACCAAGCTCGTGAGCAGTGGTGAATGCAGAAGGCAAGCCATCATCCTCGATCACTGAGCAGCTCCTCTTTGGGTCACACATTGTGCCAACGTCTGCCATGCCCAGAGTGTCACACGTGGAGGCTCCACACAGATCCTGGATCTCTTTGGTGAACAGGATGGCGGTGTCCCAATACTCCGGGTGCTTGTCGCTGTTCTTGTTGATCTTCTTTTGCCACGTACAGAAATTGCGCAGGGTCATGGCTGCGTTGCCGGTCACCTTGGGCCCTTTATCCTCGTCGGTAACCACCAGGAACTTGACCACCACGATGTTAATGGGGTTCAGGATGCTTGGGTGTTTGTAGAGGCGAGCCGCCACTGCCATGAGTGTAAGCACGTAATGCCTCAGATCGTCACCGTGGAAATTGGCCATGGACTCGTCGGCCACCACAAGCGTCTCCACGTACCGAGGCACCGATGCGAATCGCTTGAGCCGACTCCTCTGTGCGTTGGTTTTAACGCCAGCATTAGCTTCTTCGGAGCGTTTAAACTTCTCCAGGGAGCGTGCGACATCGGGCGTCGGGCCACCGTCTACGCCACATCGCGTCGTGCCGTTGCCACCAAGCTCGGCGTTGGCGCGTCGCCGCAGAAGGTGCGCGCTCTCCGCGCTCCGGCGCGCACCCGAAGACACTGAGTCGTCGCTTGCCGGATTGATAAAATACTCCCAGCCGTCGTAGCCAAACGCGCCGCGCAGGCCGTCGCACAGACTGAGAGCCGCGTACGAGAGTGGATCCAAATTCACGGTGCCCGCGTAGAAACAGCGCCGAAGGTCCGCGCGCTCGGACCCAAGGGGCATGCCCAACGTCGACAGCGTGGGTGCGATGAAGCTAGAATCCGTGTGCAAGTCGAGCACAAAATCCTGTCCAAACGCACTTACTTGGTAAGCCACTTTTTTCGGCGGTGCGTTCATTTCAGAACCGACAAAGTTGTTATTTGCATAGTCATGATTATCCACTCTGACAGGTTCGCACAGCTGACTCTGCATGGAGCGCGCAAATTTGCAAATCACTAATAAAACGTTCACAAAAAGCACAGCCCTtgtgaataaaaacatgacTGCATGCAAAATGCTGTAAGATTTCTACGGACGAGAAGGGACAGGACGCAATCTTGGGAAAAAATGAACCAGTTTTAAGGTATTTAATCAGTGCGTTTAAGAATAATCCGAATAACGGAGACGGACTAAAATGTCGCCTGCGAGCGTTCGATCCATTCCCTTGTTGCACCTGGATGCTCAAGCGTCCTTCCGCGTGCGCTGGCTTTATGCGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454787 lncRNA upstream 26828 8737873 ~ 8738074 (+) True G383609
XR_004577387.1 lncRNA upstream 149547 8614303 ~ 8615355 (+) True LOC117596219
TU454599 lncRNA upstream 199645 8563592 ~ 8565257 (+) False atf5a
TU454598 lncRNA upstream 208059 8554596 ~ 8556843 (+) True G383448
TU454593 lncRNA upstream 256520 8507216 ~ 8508382 (+) True G383443
XR_003403243.2 lncRNA downstream 175658 8950792 ~ 8953176 (+) True LOC113531289
XR_003403240.2 lncRNA downstream 179013 8954147 ~ 8964092 (+) False LOC113531287
TU454867 lncRNA downstream 179037 8954171 ~ 8964359 (+) True LOC113531287
TU455060 lncRNA downstream 349289 9124423 ~ 9124758 (+) True G383849
TU455128 lncRNA downstream 417331 9192465 ~ 9192780 (+) True G383911
XM_026922082.2 mRNA upstream 172521 8590310 ~ 8592381 (+) True gig2o
XM_026922081.2 mRNA upstream 172521 8590333 ~ 8592381 (+) False gig2o
XM_026922071.2 mRNA upstream 200218 8558826 ~ 8564684 (+) True atf5a
XM_026922054.2 mRNA upstream 214368 8495718 ~ 8550534 (+) True phldb1a
XM_026922072.2 mRNA upstream 270552 8481772 ~ 8494350 (+) True arcn1a
XM_026921836.2 mRNA downstream 3140 8778274 ~ 8793835 (+) True adamts8a
XM_026921839.2 mRNA downstream 18950 8794084 ~ 8807241 (+) False zbtb44
XM_026921837.2 mRNA downstream 18953 8794087 ~ 8808883 (+) True zbtb44
XM_026921838.2 mRNA downstream 18955 8794089 ~ 8808883 (+) False zbtb44
XM_026922308.2 mRNA downstream 66363 8841497 ~ 8866506 (+) True LOC113531529
TU454617 other upstream 173747 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 551795 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 620022 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 1487175 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 1487929 7276845 ~ 7276973 (+) True LOC113531674
XR_003403287.2 other downstream 593355 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 593697 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 594127 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 595926 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 596325 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile