Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403240.2 |
| length | 721 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC113531287 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 8954147 ~ 8964359 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003403243.2 | lncRNA | upstream | 971 | 8950792 ~ 8953176 (+) | True | LOC113531289 |
| TU454787 | lncRNA | upstream | 216073 | 8737873 ~ 8738074 (+) | True | G383609 |
| XR_004577387.1 | lncRNA | upstream | 338792 | 8614303 ~ 8615355 (+) | True | LOC117596219 |
| TU454599 | lncRNA | upstream | 388890 | 8563592 ~ 8565257 (+) | False | atf5a |
| TU454598 | lncRNA | upstream | 397304 | 8554596 ~ 8556843 (+) | True | G383448 |
| TU455060 | lncRNA | downstream | 160331 | 9124423 ~ 9124758 (+) | True | G383849 |
| TU455128 | lncRNA | downstream | 228373 | 9192465 ~ 9192780 (+) | True | G383911 |
| TU455165 | lncRNA | downstream | 348273 | 9312365 ~ 9314081 (+) | True | G383947 |
| TU455171 | lncRNA | downstream | 356579 | 9320671 ~ 9323752 (+) | True | G383951 |
| TU455173 | lncRNA | downstream | 356579 | 9320671 ~ 9322507 (+) | False | G383951 |
| XM_026922514.2 | mRNA | upstream | 69020 | 8868297 ~ 8885127 (+) | True | LOC113531654 |
| XM_026922308.2 | mRNA | upstream | 87641 | 8841497 ~ 8866506 (+) | True | LOC113531529 |
| XM_026922309.2 | mRNA | upstream | 87641 | 8844214 ~ 8866506 (+) | False | LOC113531529 |
| XM_026921837.2 | mRNA | upstream | 145264 | 8794087 ~ 8808883 (+) | True | zbtb44 |
| XM_026922366.2 | mRNA | downstream | 167797 | 9131889 ~ 9154326 (+) | True | tbcelb |
| XM_026921943.2 | mRNA | downstream | 194936 | 9159028 ~ 9185282 (+) | True | tecta |
| XM_026921944.2 | mRNA | downstream | 222568 | 9186660 ~ 9232642 (+) | True | usp2b |
| XM_026921945.2 | mRNA | downstream | 257793 | 9221885 ~ 9232642 (+) | False | usp2b |
| XM_034300896.1 | mRNA | downstream | 291792 | 9255884 ~ 9283778 (+) | False | tlcd3a |
| TU454806 | other | upstream | 179013 | 8764902 ~ 8775134 (+) | True | G383625 |
| TU454617 | other | upstream | 362992 | 8590367 ~ 8591155 (+) | False | gig2o |
| TU454332 | other | upstream | 741040 | 8182391 ~ 8213107 (+) | True | G383217 |
| TU454294 | other | upstream | 809267 | 8142611 ~ 8144880 (+) | False | spns3 |
| XR_003403275.1 | other | upstream | 1676420 | 7277599 ~ 7277727 (+) | True | LOC113531673 |
| XR_003403287.2 | other | downstream | 404397 | 9368489 ~ 9368564 (+) | True | LOC113531685 |
| XR_003403288.1 | other | downstream | 404739 | 9368831 ~ 9368903 (+) | True | LOC113531686 |
| XR_003403289.1 | other | downstream | 405169 | 9369261 ~ 9369328 (+) | True | LOC113531687 |
| XR_003403274.1 | other | downstream | 406968 | 9371060 ~ 9371137 (+) | True | LOC113531672 |
| XR_003403285.1 | other | downstream | 407367 | 9371459 ~ 9371530 (+) | True | LOC113531683 |
