RNA id: TU455128


Basic Information

Item Value
RNA id TU455128
length 316
lncRNA type intronic
GC content 0.43
exon number 1
gene id G383911
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9192465 ~ 9192780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagtgtgatctctgtgactttaactgtggcatggttgttggtgccagatgggctggtttgagtatttcagaaactgctgatctcctgggaatttcacacacaacggtctctagagtttacacagaatgatgtgaaaaacagcTGTGTGCtaagggtctgcaggctgaaacaatttgttgatgagagagatcagacgAGAATCAACAGACTGGCctgagctaacaggaagtctatagtaactcaaataagcactctgtATAATCATGGTGAGCAGATAAGCATCTCAGAATCTGGCATACATCtcacaccaacaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455060 lncRNA upstream 67707 9124423 ~ 9124758 (+) True G383849
TU454867 lncRNA upstream 228106 8954171 ~ 8964359 (+) True LOC113531287
XR_003403240.2 lncRNA upstream 228373 8954147 ~ 8964092 (+) False LOC113531287
XR_003403243.2 lncRNA upstream 239289 8950792 ~ 8953176 (+) True LOC113531289
TU454787 lncRNA upstream 454391 8737873 ~ 8738074 (+) True G383609
TU455165 lncRNA downstream 119585 9312365 ~ 9314081 (+) True G383947
TU455171 lncRNA downstream 127891 9320671 ~ 9323752 (+) True G383951
TU455173 lncRNA downstream 127891 9320671 ~ 9322507 (+) False G383951
TU455172 lncRNA downstream 128099 9320879 ~ 9322507 (+) False G383951
TU455178 lncRNA downstream 137849 9330629 ~ 9331254 (+) True G383953
XM_026921943.2 mRNA upstream 7183 9159028 ~ 9185282 (+) True tecta
XM_026922366.2 mRNA upstream 38139 9131889 ~ 9154326 (+) True tbcelb
XM_026922514.2 mRNA upstream 307338 8868297 ~ 8885127 (+) True LOC113531654
XM_026922308.2 mRNA upstream 325959 8841497 ~ 8866506 (+) True LOC113531529
XM_026922309.2 mRNA upstream 325959 8844214 ~ 8866506 (+) False LOC113531529
XM_026921945.2 mRNA downstream 29105 9221885 ~ 9232642 (+) False usp2b
XM_034300896.1 mRNA downstream 63104 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA downstream 68750 9261530 ~ 9283778 (+) True tlcd3a
XM_026922279.2 mRNA downstream 158760 9351540 ~ 9358888 (+) True c27h9orf78
XM_026922214.2 mRNA downstream 175564 9368344 ~ 9372072 (+) True rpl7a
TU454806 other upstream 417331 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 601310 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 979358 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 1047585 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 1914738 7277599 ~ 7277727 (+) True LOC113531673
XR_003403287.2 other downstream 175709 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 176051 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 176481 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 178280 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 178679 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile