RNA id: TU455165


Basic Information

Item Value
RNA id TU455165
length 1717
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G383947
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9312365 ~ 9314081 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCTTGTTTGCTGATCTTGCAGTTTTTCGATCTTTGTGATATTCTGGCtcaaaattaaatctataactaATTCTCAAATTGCGTGTGTTCATGCTGGGAGACGTGCAGCACTATTAAGATATAGTCAAGAACTGATGTGTGTAACGCTGGACATTTTCTGCACTTGCCGGTCATAGCCTGCTCTATATAGCAGAAAGGGGCATCAGAGGCAGCTGCTACTCCGTAGATTCAAAatggtaacaaaaaaaatttagagCAGCCATTTTAGAATTTAAAACTGGGGGTTATTCTTGTGGGGGCTGTTCTGGTGTTGTCCAGTGAGGTACTGGGCAGTAATGGCATTTACTTTTAGTGCAATTTAAGACATTCATGTCCTTAAAAGCCAAGTACATAGTCTAAGGGTTTTAGAAtatagtgcatagtgtgtgAGACATGGACCAAGAACTTCAAATATTGGTCATGGCACAAAGAGAAGGGGATTTAAGACCAGGTGCCCAGACATCATGATGCTCTTCAGTGCACTTTCCCTAGATTAAATAAAGGCAATAAACACAGATATTCTGTCAATCGTCCATGCCAAAGTAATCTGAGGAAGAGCTTGTACTGGTCGTTTCGTCACAGCAGTCCTCTGCATCAGAGAAAGAAGAGGTGTAGTGTAAACCGGACAGTCTGTGGTAGTCCTGCTGAGGGACTTCTGGAAAGCCGGACATTTCCATGGCTCTCGGTCCAGCTTGTGAAGCCGACGTGGTGCACATGTCAATTAACTGAGTGCATATCGCACAGCCCATTTTTGCATTATGCTGATTAATCCCAACAAACCACACCCACAATTTCAGCTGTAGAAATGCCTATAGGCTAGTGACAGACACACTGGCTGTCAGCGCCCCGACTttcacaggcacacacacatctctttgtattttatgtttttgcaTGAAACCAATTACTACTACTTAAGCTCATATTTTCTACTAGCTTTGAAATAAATGTCACATTTACAGTCTCACAGCTATAAGCCATCCACTCATACTGTCAGACAGATTAATCCACACAAATGACTCTTATCTTCTGACACTTCCAGCACtctaacaggtttatatttgaGGAGAGAAATGGCAGCTCACACTGTAGACACTGAATGATCTTCTGACTTCCTTAGTGTGTGTAACATGAAGACAAAATCCATTGGTATGTGTTTAGTTTAGCTTCCTGGCAAACCCTCGCCTAAGGGAATGACGACAATAATGTGGCACACAGGACAAAAGGCTgtgagaaagatagaaagagggaAGCTGCTGTTGCGTGTGTCTCAGCGGCACCTCATGCAGGTGTGTCTGAAGAAGGCAGGTCAGAGGTCATAGGGTCACAACACAACATTCCAGTTCAGCTTTACACTGCACAAAAGTCAAAAGCAGATATTTACGGATATGAATCTCCCTGGAGAGGACTTTCTTGCACAttcttttcacactttcaaCTGATAAGAGACGTAGGTCCAGGTTTCGGCTTTATTCTTATTATACAATGGGAATGGGCATCCTAACAGCCATCTGAGATGCCAGCAATGTCCTTCTTTATTCCATAGTCTTGGGTGTGTTGCGGATCTGTTCAAGTGGCTGCTGCTTGAACATGTTTCAGGAAGCCTGTtggacactcatgtttctgtcCTGCCTGTGAGGAGTAAAATGAGATGCTGAAATGAGCCTCCAATACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455128 lncRNA upstream 119585 9192465 ~ 9192780 (+) True G383911
TU455060 lncRNA upstream 187607 9124423 ~ 9124758 (+) True G383849
TU454867 lncRNA upstream 348006 8954171 ~ 8964359 (+) True LOC113531287
XR_003403240.2 lncRNA upstream 348273 8954147 ~ 8964092 (+) False LOC113531287
XR_003403243.2 lncRNA upstream 359189 8950792 ~ 8953176 (+) True LOC113531289
TU455171 lncRNA downstream 6590 9320671 ~ 9323752 (+) True G383951
TU455173 lncRNA downstream 6590 9320671 ~ 9322507 (+) False G383951
TU455172 lncRNA downstream 6798 9320879 ~ 9322507 (+) False G383951
TU455178 lncRNA downstream 16548 9330629 ~ 9331254 (+) True G383953
TU455179 lncRNA downstream 17181 9331262 ~ 9331555 (+) True G383954
XM_034300896.1 mRNA upstream 28587 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA upstream 28587 9261530 ~ 9283778 (+) True tlcd3a
XM_026921944.2 mRNA upstream 79723 9186660 ~ 9232642 (+) True usp2b
XM_026921945.2 mRNA upstream 79723 9221885 ~ 9232642 (+) False usp2b
XM_026921943.2 mRNA upstream 127083 9159028 ~ 9185282 (+) True tecta
XM_026922279.2 mRNA downstream 37459 9351540 ~ 9358888 (+) True c27h9orf78
XM_026922214.2 mRNA downstream 54263 9368344 ~ 9372072 (+) True rpl7a
XM_034300797.1 mRNA downstream 66505 9380586 ~ 9387508 (+) True surf6
XM_026922284.2 mRNA downstream 66505 9380586 ~ 9387508 (+) False surf6
XM_034300799.1 mRNA downstream 66505 9380586 ~ 9387508 (+) False surf6
TU454806 other upstream 537231 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 721210 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 1099258 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 1167485 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 2034638 7277599 ~ 7277727 (+) True LOC113531673
XR_003403287.2 other downstream 54408 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 54750 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 55180 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 56979 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 57378 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile