RNA id: TU455171


Basic Information

Item Value
RNA id TU455171
length 3082
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G383951
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9320671 ~ 9323752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATTAGTTCACTTGTCAGTGACATCTACACGCTCAGAGTCAAAAAGCCATTACACAAGCACAAAGCTTGGCATTTTAAATAGTTGCAATTCACATAATTAGCAAAACAGTCATTCTTTGTTCTCAacacttttcttttaataatcagattatcAAGCTGTCTATGATTGTGCTCAATGAAACAATCGGCTGAACTTTTAATTAAGGAGGAAATATACAtcataatataaacctgaaataggatttaatatttaaatatgcatgTTTTAAGTACAGATGGGAGCAACAGTAGCATTAAGATGATACAATAGCAAAGGACCACCGCCCCCTGTTGCCATCAACTCGACTAAGCACAATATGCTGGACGTTATAGCCACCACCGTTCCTAGTGAAATCATATGTACTTTAGCATAACAGTAAAACACTGTTCACTGTCATGGCTCCTCACACTGACTTCATTGCACAAGCCCTGAATTTACTAATTAACCAAAAACACAAGTTAAAATGTTGGTATAACTGTCAACAGTCTACTTTGGTGAATTTCAACTGGAGCTGAACGCAACGgcacataaacaaacatttataaataaaggaCTGTAAAAGACTGACTTTGTAACTCCTTGTAACTCactcttttcatttcttcataataataaaaaaacttttcttttttttttacgaagTGTACATTGATACTTCAAATTACAAAGGAACAGAGACATAACCCTCACTCACATTTGACACACAGTATATGACTTCCAAATCCAGTTATGTTTAAAACAGAGTCTAATACTTTAACCATAACAGAAAAATGGCCAAACATAAATAACAGAAGTCTCTTACTGAACCACCGAAGATTGGCTCTCATGATATGACTTCACTTTCTGTGCCTTAATTGCCATGGTTTTGCCTTAACTTTCTATTAAATTAAAGGTCAACCTTCAAGCTTGAAAACCAGTTTACGTTAAATAGTGTCTGACATGATAGCATTAGAGTTAAATGAGTCAGTATTTGATCACATTTCATGGAAGTCAGGAACGGCTCTGATGTAAGTGCTAAACACTTTGCTATGACTCAGTCTGAAAGGAGGCTACTAGCCACATATACTACCTGAAACAACATTAGCAGCCATCAGAAGAACACATTAGAAAAATGTGGAGGACTGACCAAAGATCAGGTATGTATTGTGGTTTATAGTCTGCTTGGGTCTAAGCTTATAGTATCGCTCTAAAAAGCAGCAACCAGGATCGGGTCTCAACAGTTGAAAACACAAGGAAAACTCAATGTAGCTAAATAGttgaatttgaatgaatttgttatctctgtgtgtgtgtgtgagagagagagacagagacagagagaggaatgagTGAACTGGGTTTGCTTTTGTGTACGCACATCTGTGGGAGTGCAGATTTATGGTACAGTAAGTAATGCATCAATCCCAGTTAGAACTTTGTCTGCTGGGAGTAAATATTTACAACCTCGAACATTGTGTTCATTTCACAAAGTGCATGTAAAGCTTTTTACTTTATAAGTTTTATTCAAGAGAACCTGTGCATTACTGCACATGTGTAATCTGAATTCTGGAAgaaataaagtttaaatgtaaatgtaagtatgGGAGATCTGAAGAGGGGAAATGGGCTCAGTCTCCCAGCTGCATGAAATGAGTGACTCACTGTACCTGACACTGTCCAGACATACAGACCTTCTAGTATACCAACCCTGTGTTACTAGACATCCAAGTCCTATAGAGGTAATAGACCACGACATTAGGTGCGCTCACAAAGTGCTTACAGGAAAGCAGGCGTAAACACGGTGCAGATAAAGTTCAGCCACATTCAGGATACCACCTGCGTGGGAACGAAACAAGAATTAGAAACCATACTTGCAGTATAATTCTGCATTCACAATGACAAAGCAACTGTCCCTACGTAGGTTCACAAAACTGTTTTTAGTGTCGTGACAGAGGTGCTCATCATAAATACCCTGACATCATAAATACCGCTCCACTGGCTGAAATCAGTCTCATGGTTAGCTATGCTTACAAATAGGTCACATGGTATCATACAGCCATCTTGTGCCATAGTGaaataaattagaattttttaaatcatgaaaacaaaaaagctacagtcgggtccataaatatttggacattgacaaattattgttataaaaatattgtttttttagttttctaccacagtataaataaaagtagaaaTTAAATAGTGATAAATGCAGACTTTTAGGTTTAATTTGATAGTATTTACATTCTATTTGGGTGAACGGTGCAGGAATTACAGCTCTTTACACCCTGCTTTGTAAGGGACCAACtggtaattggacaaactaacaatcataaattaaattgtcatttttaatacttggttgaaAATCCtctgcagtcaatgactgcctgaagtctggagcccatatACATCACctctgccaggtctttactgcagctgtcttcagttcctgcttgttcttggggtgtTATCCTTCAGTTTCAACTTCAGCAAATGAAATGCATGGCCAGTTAGATTCGCCAaaaattccacttctttgcctttaAAAGGCTTTGGGCTGCTTTCGAAGTATGCTTCAGTTCACTGTACATCTCCACTGTGAAGCACTATCCAATGAGTTTAGAAGCATTTGGCTGATAATGCTGATAATGTTCTTTATCTGGCTAACTGCTATGAAGTGTTTCTTCTTGTCATTCAACACAGTTGTGTTCTTTGGTCTtctgggccttttggtgtttctgagctcaccagtgccttctttcttttcaagaATGTAGCAAATAAGTGATATGGCCACACTTAATGTTTTTggtatctctctgatgggtttgttttgatttctcAGCagaatgatggcttgcttcactggcagtgacagctctttgggcTTCATATTGAAAGTTAACAGCAatagattccaaatgcaaatgccacacttgaaaCCAACCCTAGACCTGCTTACTTCTAAGTGTCATAAtaagggaataacacacacctggccattaCGGACACGAAACTTGATTATGGAAAGAATGTCTAGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455165 lncRNA upstream 6590 9312365 ~ 9314081 (+) True G383947
TU455128 lncRNA upstream 127891 9192465 ~ 9192780 (+) True G383911
TU455060 lncRNA upstream 195913 9124423 ~ 9124758 (+) True G383849
TU454867 lncRNA upstream 356312 8954171 ~ 8964359 (+) True LOC113531287
XR_003403240.2 lncRNA upstream 356579 8954147 ~ 8964092 (+) False LOC113531287
TU455178 lncRNA downstream 6877 9330629 ~ 9331254 (+) True G383953
TU455179 lncRNA downstream 7510 9331262 ~ 9331555 (+) True G383954
TU455183 lncRNA downstream 9925 9333677 ~ 9334230 (+) True G383958
TU455184 lncRNA downstream 11506 9335258 ~ 9335621 (+) True G383959
TU455188 lncRNA downstream 13158 9336910 ~ 9337450 (+) False G383960
XM_034300896.1 mRNA upstream 36893 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA upstream 36893 9261530 ~ 9283778 (+) True tlcd3a
XM_026921944.2 mRNA upstream 88029 9186660 ~ 9232642 (+) True usp2b
XM_026921945.2 mRNA upstream 88029 9221885 ~ 9232642 (+) False usp2b
XM_026921943.2 mRNA upstream 135389 9159028 ~ 9185282 (+) True tecta
XM_026922279.2 mRNA downstream 27788 9351540 ~ 9358888 (+) True c27h9orf78
XM_026922214.2 mRNA downstream 44592 9368344 ~ 9372072 (+) True rpl7a
XM_034300797.1 mRNA downstream 56834 9380586 ~ 9387508 (+) True surf6
XM_026922284.2 mRNA downstream 56834 9380586 ~ 9387508 (+) False surf6
XM_034300799.1 mRNA downstream 56834 9380586 ~ 9387508 (+) False surf6
TU454806 other upstream 545537 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 729516 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 1107564 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 1175791 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 2042944 7277599 ~ 7277727 (+) True LOC113531673
XR_003403287.2 other downstream 44737 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 45079 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 45509 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 47308 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 47707 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile