RNA id: TU455186


Basic Information

Item Value
RNA id TU455186
length 881
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G383960
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9336910 ~ 9337906 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGAGCTCTGCCGGTCCCCATCTGCTCTCCAACTCTTTCGTTCTGCTCCTCCTGCACTGCCGTGTCCACATCAGCGTCCTCGTCCATCTCCGGcgttctctcctctcctctgtcctCCCGCCGTCTCTCCTTCAGCTTCTCCTTCTCAGAGATCCCACTACTCTCCCTCGTTCCTGTGCACTCGTCCTGAATAAGAAGCTCCGTCTCACCTCCTGCTCTATCTCCATCACCTCTCTCGCTCCCTGAACCCGAGTCACATGACAGGAAGTCATCCTCCGAGGGGCTACGGTCTCCGCCAGCATGGTCTTGGTTGTCGTGATTGCTCTCCGAGTCATTTTCAGTGATGGAGTTGCTGTAGTCAATGACAGGCTCCTTCAGTTCCTCATGCAGCTGATCCATCAGACAGCGCAGGAACTCCTGAGTGTCCTGAAGGGCACAGAGCTGACAAAGCTAAGTTTGAACTGTTTGCACAATACcgaaacacttttttttgcatcatatgAGCACTGCATCTTATAATATTGGCTGCTATACACTGGACTGTTTTTCACATATTGCAGGAGTTGATAAATCAGAAATTCAGCAGCTAGCCCACCAGTAATGTGAAACCAAATTGACTAGACAAGTTAGCTAGTGAAGGGCATTAATACGGACTACAAAAAATTAACAAGTTTGTGATCCTCATCCTCTTCGAATAAAGTTTCGAGCACAATGAATTTTTGTTCTTGACCAAAATTTTTGTCGTTAGACCAACGTTTCAGGTTAGAGATGTGGTGTTCTATCCTTGTATCACACGTAAAAGATAGTTTGAGTCTGGTTAGCATTCTTATTTTTTCTCAAGATGTTTTCCCATGAGGTGACACTTAGTTATAGTAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455184 lncRNA upstream 1405 9335258 ~ 9335621 (+) True G383959
TU455183 lncRNA upstream 2796 9333677 ~ 9334230 (+) True G383958
TU455179 lncRNA upstream 5471 9331262 ~ 9331555 (+) True G383954
TU455178 lncRNA upstream 5772 9330629 ~ 9331254 (+) True G383953
TU455172 lncRNA upstream 14519 9320879 ~ 9322507 (+) False G383951
TU455189 lncRNA downstream 1027 9338933 ~ 9339146 (+) True G383961
TU455193 lncRNA downstream 4522 9342428 ~ 9342645 (+) True G383965
TU455199 lncRNA downstream 34260 9372166 ~ 9454589 (+) True G383971
XR_004577435.1 lncRNA downstream 116139 9454045 ~ 9456252 (+) True LOC117596253
TU455393 lncRNA downstream 148556 9486462 ~ 9486667 (+) True G384106
XM_034300896.1 mRNA upstream 53248 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA upstream 53248 9261530 ~ 9283778 (+) True tlcd3a
XM_026921944.2 mRNA upstream 104384 9186660 ~ 9232642 (+) True usp2b
XM_026921945.2 mRNA upstream 104384 9221885 ~ 9232642 (+) False usp2b
XM_026921943.2 mRNA upstream 151744 9159028 ~ 9185282 (+) True tecta
XM_026922279.2 mRNA downstream 13634 9351540 ~ 9358888 (+) True c27h9orf78
XM_026922214.2 mRNA downstream 30438 9368344 ~ 9372072 (+) True rpl7a
XM_034300797.1 mRNA downstream 42680 9380586 ~ 9387508 (+) True surf6
XM_026922284.2 mRNA downstream 42680 9380586 ~ 9387508 (+) False surf6
XM_034300799.1 mRNA downstream 42680 9380586 ~ 9387508 (+) False surf6
TU454806 other upstream 561892 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 745871 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 1123919 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 1192146 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 2059299 7277599 ~ 7277727 (+) True LOC113531673
XR_003403287.2 other downstream 30583 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 30925 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 31355 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 33154 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 33553 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile