RNA id: TU455189


Basic Information

Item Value
RNA id TU455189
length 214
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G383961
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9338933 ~ 9339146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtcattttgagtctggttcctttcaaggtttcacCCTCATGTCGCCTCGGGaagcttttccttgccactgtcacctctggcttgctcattaggaatataAATCGATAACcagatttctctaaagctgctttgtgacaatgtcttttgttaaaagtgttagACACTTGAACTGAAAAAGGGGACAAAAAGGTTAAAATGCGCAGGTAAAAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455186 lncRNA upstream 1027 9337026 ~ 9337906 (+) True G383960
TU455188 lncRNA upstream 1483 9336910 ~ 9337450 (+) False G383960
TU455185 lncRNA upstream 1483 9337026 ~ 9337450 (+) False G383960
TU455184 lncRNA upstream 3312 9335258 ~ 9335621 (+) True G383959
TU455183 lncRNA upstream 4703 9333677 ~ 9334230 (+) True G383958
TU455193 lncRNA downstream 3282 9342428 ~ 9342645 (+) True G383965
TU455199 lncRNA downstream 33020 9372166 ~ 9454589 (+) True G383971
XR_004577435.1 lncRNA downstream 114899 9454045 ~ 9456252 (+) True LOC117596253
TU455393 lncRNA downstream 147316 9486462 ~ 9486667 (+) True G384106
TU455412 lncRNA downstream 187165 9526311 ~ 9526518 (+) True G384125
XM_034300896.1 mRNA upstream 55155 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA upstream 55155 9261530 ~ 9283778 (+) True tlcd3a
XM_026921944.2 mRNA upstream 106291 9186660 ~ 9232642 (+) True usp2b
XM_026921945.2 mRNA upstream 106291 9221885 ~ 9232642 (+) False usp2b
XM_026921943.2 mRNA upstream 153651 9159028 ~ 9185282 (+) True tecta
XM_026922279.2 mRNA downstream 12394 9351540 ~ 9358888 (+) True c27h9orf78
XM_026922214.2 mRNA downstream 29198 9368344 ~ 9372072 (+) True rpl7a
XM_034300797.1 mRNA downstream 41440 9380586 ~ 9387508 (+) True surf6
XM_026922284.2 mRNA downstream 41440 9380586 ~ 9387508 (+) False surf6
XM_034300799.1 mRNA downstream 41440 9380586 ~ 9387508 (+) False surf6
TU454806 other upstream 563799 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 747778 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 1125826 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 1194053 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 2061206 7277599 ~ 7277727 (+) True LOC113531673
XR_003403287.2 other downstream 29343 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 29685 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 30115 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 31914 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 32313 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile