RNA id: TU455412


Basic Information

Item Value
RNA id TU455412
length 208
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G384125
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9526311 ~ 9526518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGCCCAATGCTAGCATACATAATGACAATGAGGGTGAGTGGACCCAGATAGATACTGGCAAAGAGCACAGTGGTATAGATTTTGCGCATTTCCTTGTTCGGCCAGTTCTCATGGCACCAGTAGAATGGCCGAGTAGAATTGCCATCCCCTAATAAAATGGAGATCTGACTCTCCTCGGTGACCTGCAACATGACACCTGATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455393 lncRNA upstream 39644 9486462 ~ 9486667 (+) True G384106
XR_004577435.1 lncRNA upstream 70059 9454045 ~ 9456252 (+) True LOC117596253
TU455199 lncRNA upstream 71722 9372166 ~ 9454589 (+) True G383971
TU455193 lncRNA upstream 183666 9342428 ~ 9342645 (+) True G383965
TU455189 lncRNA upstream 187165 9338933 ~ 9339146 (+) True G383961
TU455422 lncRNA downstream 34617 9561135 ~ 9561374 (+) True G384134
TU455437 lncRNA downstream 155795 9682313 ~ 9686604 (+) True G384144
TU455438 lncRNA downstream 155795 9682313 ~ 9686604 (+) False G384144
TU455439 lncRNA downstream 155795 9682313 ~ 9686604 (+) False G384144
TU455489 lncRNA downstream 264626 9791144 ~ 9791911 (+) True G384182
XM_026921492.2 mRNA upstream 25322 9487839 ~ 9500989 (+) False LOC113531033
XM_034300457.1 mRNA upstream 25322 9487842 ~ 9500989 (+) True LOC113531033
XM_026922215.2 mRNA upstream 53020 9461617 ~ 9473291 (+) True kank1b
XM_026921902.2 mRNA upstream 75024 9432528 ~ 9451287 (+) True prkaa1
XM_034300609.1 mRNA upstream 77699 9432568 ~ 9448612 (+) False prkaa1
XM_034300877.1 mRNA downstream 14043 9540561 ~ 9557895 (+) True glipr2
XM_034300878.1 mRNA downstream 29528 9556046 ~ 9557895 (+) False glipr2
XM_026922139.2 mRNA downstream 45439 9571957 ~ 9574670 (+) True zgc:55461
XM_026921577.2 mRNA downstream 150785 9677303 ~ 9681436 (+) True pole3
XM_034300525.1 mRNA downstream 160521 9687039 ~ 9707115 (+) False lrsam1
XR_003403285.1 other upstream 154781 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 155174 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 156983 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 157408 9368831 ~ 9368903 (+) True LOC113531686
XR_003403287.2 other upstream 157747 9368489 ~ 9368564 (+) True LOC113531685
TU455483 other downstream 239222 9765740 ~ 9768036 (+) True G384178
TU455978 other downstream 851695 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1771462 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 4295270 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 4299332 13825850 ~ 13828148 (+) True G386325

Expression Profile