RNA id: TU455483


Basic Information

Item Value
RNA id TU455483
length 2297
RNA type TUCP
GC content 0.51
exon number 1
gene id G384178
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9765740 ~ 9768036 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcttttcattttttattaaggttataaattttaaacaaatactttCTAAAACAGTTTTACCCGGTGATATACAATTTAATATGCACAAAAATACAAGAATACCAACAAAATATGGAGAGTACGTCTGAAAACGTCTTTAATTCAGTACACATAGTGCTTATATAATGTGAGGACTTATGGCTAACTTATGAGATTGCCTTTTTAGAACAAAAGGTCTAACAttgtagaaaataaaatcaaacccaCAAAACCAAGCAAATGCTGGCATCATGAATTACTGTGAACTTTTTGAGAGAGGAACAGGAGGGAGATTGTGACGCCAAATTGTCAACAAAAAGATGCCTGGCTGGTTCCATCACGCCGTGCATTCTGGGAGTTGTGGTGTTAATTAATGGGCCCCAGCATTGAGCGAGATGAGGTGACTGGCATAGATGGACTACAGACACACTGGTACTGCGAGTCAGTGCAGTAAACAAAATGCACCAGGTATTGCCACttcaaaacacaaaagacaacAAACCAGAGAGAGGAGTTTAAACTATTGCACCTTCTTCAGCCTATATGATTGCCTTGCGTGACATTAAAGGTGTAATCTGAAATATGCCAGTCCCTCTATCTAGGCTCACATGGTGTTCCTGTGAGCAGATCAGCTAGTCTTTCTGCCAGGAGCCATTTCATAAACAAGatgtaaaaagaaaagtataaaaagCACCCTCTCATGCCTGAGAACGTGCAGTGTTAggatgagctgtgtgtgttatttcaaaCATTACATGGGTAATGTTAATTTACAAGACATCTTAGTGAAGTTGCTTATGAAACAACTCAAGAAGCAAAACAATCCAcgagcaaaaaaacaaaaacaaaacaaaaaaacaaaacaaaaaacattcaaaacctGCCATGTTCGTGGTGAGAGCTAGCTAGCAGTTCCGCGTTGGGTTTTAAGGCAACGAAATTGGTTGAGATCATTTCAGCAACAAAATGTTCGCGATGTCAACGTTGTCGGTGtagaaggacacacacacacgcacacacactcatacacacacacagtggcaggCAGGCGTCCACTCCGCGCCTCCCCACAAACGAACGAAACGAAAACAAACCTAACTCGAGTGTTTTAAATAACGTTCTGTTGCAAAAATAAAGTCTCAGGCTTTGTACagtttttttcatcataaaggATTTGAGTCTATTTCTTTACCACAGGGTCAAAAAGCTACGATGGCTCTCGTCCATGCCCCTAAACTCGCCAGCGCCTGCTTGCTGCAGAACTGTCCGTTAAGCGCTTGCTCTAAGTCCGCCTGCCGGCTCACCAGCCCCGAGAAGCCCGAGCCGAAGATGGAGATCAGGTTGGAGATGTTACACGCCTCCAGCGGCTCGGCGCCTCCCGCGTACGCGCACTCCTCCAACTTCTGGCGCTTGCACGGCGCGAACTCCGGCGTCTCCTCCAGCTCGGGCGCGTAGTAGCCGAAGTCCATTTTGCGCTTCCTGACCGGGCCGTGCGCGCTCGGACAGCACGGTGCCAGCGGCGCGCAGCAGTCCTGATGCAGGCAGCCGTTCTCCACCGTGGTCACGACGTGCGTGTCCAGGTCCAGCACGGTGGTCTTGCTGCAGTGCACGCCGCCCGACGGCGAGAAGTCGCAGCTCGGCGCCACGGCGCACGCCTCCACGCAGCAGCTGCGGTAGAACACGGCGTCCGACTGCTTACAAGACGAATCctcgtcctcttcctcctcgGACTGGAGAACGAGAGACGCGGAGCACGCGCCCGGCGGCGGCTGTGGAGCGCGCGGGCCGACCGGCGAGAGCGCAGCGCACAGGCTGGGTGCAGGGCTCGCCACGCCGCAGCAGCTCGGCTCCTCCTCGGCGTCCTCAGCCACGTCGAGCGGGTTCAGCTCCTGGATCTCGTTGCACACGGTCATGACCTCCTCGTACTGCTGCATCCTGTAGATCTCCGCGTACTTTTCGTTCATGTAGACCTGGCGCGCGTTCCTCAGCACGTACGACACCAGGAGGTTCTTGTGCAGCTTGATGCCTCCGCGCTGCGTCCGCGAGTTGTGAATCTTCCGCAACGAGATCGAGATCAGGCTCTGCGCGTCCACCGCGCACTCCCCCGTGTTGATCATTGTACTTGTAGACCCCTCTCCCACACTTCGGCGAAGGAAGCACTCGGGCTTTCACTCAGTCGAAAGCGCGGTATTTGGTTCGGGGGCGCAGGCTCAGGTTCGCTCGCTGGTGAAACATTGAACAAGTCCGTCCCTGTCCGCTGCCTCTTAACGGGCGAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455437 lncRNA upstream 79136 9682313 ~ 9686604 (+) True G384144
TU455438 lncRNA upstream 79136 9682313 ~ 9686604 (+) False G384144
TU455439 lncRNA upstream 79136 9682313 ~ 9686604 (+) False G384144
TU455422 lncRNA upstream 204366 9561135 ~ 9561374 (+) True G384134
TU455412 lncRNA upstream 239222 9526311 ~ 9526518 (+) True G384125
TU455489 lncRNA downstream 23108 9791144 ~ 9791911 (+) True G384182
TU455490 lncRNA downstream 26047 9794083 ~ 9794859 (+) True G384183
TU455496 lncRNA downstream 36546 9804582 ~ 9805004 (+) True G384189
TU455504 lncRNA downstream 45449 9813485 ~ 9813691 (+) True G384197
TU455519 lncRNA downstream 67668 9835704 ~ 9835912 (+) True G384212
XM_026921891.2 mRNA upstream 3902 9743409 ~ 9761838 (+) False ptpa
XM_026921893.2 mRNA upstream 3902 9743409 ~ 9761838 (+) False ptpa
XM_026921894.2 mRNA upstream 3902 9743456 ~ 9761838 (+) False ptpa
XM_034300599.1 mRNA upstream 3902 9743758 ~ 9761838 (+) True ptpa
XM_034300525.1 mRNA upstream 58625 9687039 ~ 9707115 (+) False lrsam1
XM_026921569.2 mRNA downstream 212264 9980300 ~ 9987624 (+) True ntmt1
XM_026921570.2 mRNA downstream 212275 9980311 ~ 9987628 (+) False ntmt1
XM_026921571.2 mRNA downstream 216001 9984037 ~ 9987628 (+) False ntmt1
XM_026922347.2 mRNA downstream 236960 10004996 ~ 10042974 (+) True gpr107
XM_034300715.1 mRNA downstream 285757 10053793 ~ 10092897 (+) False ncs1a
XR_003403285.1 other upstream 394210 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 394603 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 396412 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 396837 9368831 ~ 9368903 (+) True LOC113531686
XR_003403287.2 other upstream 397176 9368489 ~ 9368564 (+) True LOC113531685
TU455978 other downstream 610177 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1529944 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 4053752 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 4057814 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 5593322 15361358 ~ 15367247 (+) True fkbp6

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059064 True 2237 mRNA 0.48 1 NC_007116.7 32791245 ~ 32793481 (+)
grasscarp (Ctenopharyngodon idella) CI01000339_07234668_07235576.mRNA True 2312 mRNA 0.46 1 CI01000339 7234476 ~ 7236787 (+)
bowfin (Amia calva) AMCG00020164 True 807 mRNA 0.62 2 CM030127.1 12206692 ~ 12207552 (-)