RNA id: TU455799


Basic Information

Item Value
RNA id TU455799
length 289
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G384466
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10129243 ~ 10129531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGCATTCTGTCTCAGCTGTGGCAGCTCCTTCATACATGAGCTCTTAAAAAGACAAAGGGAAATTGCCTTTTGGCATTTGGCAAAAAATGGCCTTTTGGCATTTGACCATTTTAATCAGGATGGAATTGTATATGTGGAAAGTCGTTTGAGGCCATGCATAAATAATTTGGCCTAGTCCTTGCTTGACAACAGTGCAGCCAATACGTATTGTTTTTCTGCTGGGGATATGCTGGTCTGTCATACGTCATCCATTAACTGGGCCCAGGACTTGACTCATTGGCTTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455792 lncRNA upstream 1272 10127771 ~ 10127971 (+) True G384461
TU455790 lncRNA upstream 6357 10122533 ~ 10122886 (+) True G384459
TU455519 lncRNA upstream 293331 9835704 ~ 9835912 (+) True G384212
TU455504 lncRNA upstream 315552 9813485 ~ 9813691 (+) True G384197
TU455496 lncRNA upstream 324239 9804582 ~ 9805004 (+) True G384189
TU455967 lncRNA downstream 177143 10306674 ~ 10306908 (+) True G384583
TU456005 lncRNA downstream 228128 10357659 ~ 10358263 (+) True G384606
TU456006 lncRNA downstream 228739 10358270 ~ 10358498 (+) True G384607
TU456007 lncRNA downstream 231724 10361255 ~ 10361490 (+) True G384608
TU455977 lncRNA downstream 251039 10380570 ~ 10388271 (+) True G384592
XM_034300856.1 mRNA upstream 16088 10102353 ~ 10113155 (+) False fbxw2
XM_034300854.1 mRNA upstream 16088 10102484 ~ 10113155 (+) True fbxw2
XM_034300853.1 mRNA upstream 16088 10102484 ~ 10113155 (+) False fbxw2
XM_034300855.1 mRNA upstream 16088 10102495 ~ 10113155 (+) False fbxw2
XM_026922103.2 mRNA upstream 34436 10053795 ~ 10094807 (+) True ncs1a
XM_026921547.2 mRNA downstream 2747 10132278 ~ 10135643 (+) True gas1b
XM_034300646.1 mRNA downstream 40590 10170121 ~ 10183321 (+) True dab2
XM_034300648.1 mRNA downstream 40591 10170122 ~ 10183321 (+) False dab2
XM_034300649.1 mRNA downstream 40593 10170124 ~ 10183321 (+) False dab2
XM_034300650.1 mRNA downstream 40593 10170124 ~ 10183321 (+) False dab2
TU455483 other upstream 361207 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 757713 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 758106 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 759915 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 760340 9368831 ~ 9368903 (+) True LOC113531686
TU455978 other downstream 248682 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1168449 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 3692257 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 3696319 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 5231827 15361358 ~ 15367247 (+) True fkbp6

Expression Profile