RNA id: TU455978


Basic Information

Item Value
RNA id TU455978
length 1453
RNA type TUCP
GC content 0.47
exon number 1
gene id G384593
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10378213 ~ 10379665 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcgtgcgtgtgtgtgtgcgtacaaacatatatacacacacagatcagccataacattaaaaccactgacaggtgaagtgaataatatattaggcagcaagtgaacagtcagttcttgaagcaggaaaaatgggtaagtgtaaggatctgagcaacaacaccttcttaaaaaaaaaaactttggcaaggcccaaattgtgatggctagacaacagggtcagagcatctccaaaataaCAGGTTTTCGCAGTGTGtggtggttagtacctaccaaaagtggtccaaggtaggacaaccggtgaacctgtgacagggtcatgggcgctcAATGATGTCAAGCGGTGGGATATAAGTGAACAAATGAACAGTCacttctcgaagttgatgtgttgcaagcaggaaaaatgggcaagtgtaaggatctgagtaactttgacaagggccaaagtgatggctagatgactgggtcagagcatctccaaaacggcagatgttgtggagtgttcccagtatgcagtgattagcacctaccaaaagtggtacaaggaaggacaactggtgaaccgctgacagggtcatgggagcccaaggctcactgatgcatgttgggagtgaaggctagttcatctggtctgatcccacagaagagctattgtagcacaaattgctgaaaatgttcatgctggctatgatagaaaggtgtcagaacaaacagtgcattgcagcttgctgcgtatggggctgcgtagccacagaccggtcagagtgcccatgctgaccccatCCCCctcaaaagcacctacaatagGCACATGAGCATTacaactggaccatggagcaatggaataaagtggcctggtctgatgaatcacgttttcttttacattatgtagAGGactgggtgcatgtgcatcgcttacctggggaagagatgcactatgggaagaaggcaagctggcagaggcagcttgatgctctgggcaatgttctgctgggaaaacttcggtcctggcattcatgtggatgttactttgacatgtaccacctacctaaacattgttgcagaccaagtacaccccttcatggcagcattattccctaatggcagtggcctctttcagcaggataatgtgccctgccacactgcaaaaattgttcaggacaaaaagttcaaggtgttgatttggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaaggccccacctcgcaacttacaggactcaAAGGATCAGCTGCTCACGTCtgggtgccagataccacagcacaccttcagaggtcttgtggagttcatgcctcGACTCAAGTCAAAGCCATTGACTCTCTCGAGTCAAAGCCATTTTCGCGgtacaagggggacctacacaatattaggcagatagttttaatgttgtggctgatctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456007 lncRNA upstream 16723 10361255 ~ 10361490 (+) True G384608
TU456006 lncRNA upstream 19715 10358270 ~ 10358498 (+) True G384607
TU456005 lncRNA upstream 19950 10357659 ~ 10358263 (+) True G384606
TU455967 lncRNA upstream 71305 10306674 ~ 10306908 (+) True G384583
TU455799 lncRNA upstream 248682 10129243 ~ 10129531 (+) True G384466
TU455977 lncRNA downstream 905 10380570 ~ 10388271 (+) True G384592
XR_003403244.2 lncRNA downstream 102469 10482134 ~ 10490299 (+) True LOC113531306
TU456108 lncRNA downstream 180340 10560005 ~ 10560651 (+) True G384700
TU456113 lncRNA downstream 186639 10566304 ~ 10566511 (+) True G384705
TU456133 lncRNA downstream 212611 10592276 ~ 10592482 (+) True G384725
XM_034300544.1 mRNA upstream 75 10367262 ~ 10378138 (+) False arpc5lb
XM_034300546.1 mRNA upstream 75 10370497 ~ 10378138 (+) False arpc5lb
XM_034300545.1 mRNA upstream 1744 10367257 ~ 10376469 (+) True arpc5lb
XM_026922385.2 mRNA upstream 36709 10320064 ~ 10341504 (+) True cabp7b
XM_026922013.2 mRNA upstream 93662 10272650 ~ 10284551 (+) True taok3b
XM_026921623.2 mRNA downstream 405892 10785557 ~ 10825976 (+) True ppp1cc
XM_034300946.1 mRNA downstream 646203 11025868 ~ 11096141 (+) False fer
XM_026922376.2 mRNA downstream 646204 11025869 ~ 11096141 (+) False fer
XM_026922377.2 mRNA downstream 647492 11027157 ~ 11096141 (+) True fer
XM_034300944.1 mRNA downstream 647604 11027269 ~ 11096141 (+) False fer
TU455483 other upstream 610177 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 1006683 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 1007076 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 1008885 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 1009310 9368831 ~ 9368903 (+) True LOC113531686
XR_003403209.2 other downstream 918315 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 3442123 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 3446185 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 4981693 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 5655158 16034823 ~ 16038605 (+) True LOC113531248

Expression Profile