RNA id: TU456279


Basic Information

Item Value
RNA id TU456279
length 211
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G384868
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10784701 ~ 10784934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAGCACACGCTCGTCAAAGAAGACGGAAGGCAGTGGATGAGGGAAATTTTATATTGGCGAGACGCGTCGGTCTTTAGCAGAGAGACGCGTCGGTGCTTTATTGTTTAGACTTCAGATGTACTTTGAACAATATTATTCCGATTTAAACAATATGAATCTGAATTTGAGTAAACCGGGGAAAGAAACGTCATAACGTCTCATCAAACCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456278 lncRNA upstream 902 10783404 ~ 10783799 (+) True G384867
TU456269 lncRNA upstream 94060 10690140 ~ 10690641 (+) True G384859
TU456148 lncRNA upstream 175084 10608952 ~ 10609617 (+) True G384740
TU456136 lncRNA upstream 190036 10594450 ~ 10594665 (+) True G384728
TU456133 lncRNA upstream 192219 10592276 ~ 10592482 (+) True G384725
TU456303 lncRNA downstream 137950 10922884 ~ 10937401 (+) True G384887
TU456323 lncRNA downstream 311908 11096842 ~ 11097935 (+) True G384906
TU456400 lncRNA downstream 331444 11116378 ~ 11116582 (+) True G384973
XR_004577443.1 lncRNA downstream 341449 11126383 ~ 11127885 (+) True LOC117596264
XR_003403219.2 lncRNA downstream 345942 11130876 ~ 11131867 (+) True LOC113531091
XM_034300544.1 mRNA upstream 406563 10367262 ~ 10378138 (+) False arpc5lb
XM_034300546.1 mRNA upstream 406563 10370497 ~ 10378138 (+) False arpc5lb
XM_034300545.1 mRNA upstream 408232 10367257 ~ 10376469 (+) True arpc5lb
XM_026922385.2 mRNA upstream 443197 10320064 ~ 10341504 (+) True cabp7b
XM_026922013.2 mRNA upstream 500150 10272650 ~ 10284551 (+) True taok3b
XM_026921623.2 mRNA downstream 623 10785557 ~ 10825976 (+) True ppp1cc
XM_034300946.1 mRNA downstream 240934 11025868 ~ 11096141 (+) False fer
XM_026922376.2 mRNA downstream 240935 11025869 ~ 11096141 (+) False fer
XM_026922377.2 mRNA downstream 242223 11027157 ~ 11096141 (+) True fer
XM_034300944.1 mRNA downstream 242335 11027269 ~ 11096141 (+) False fer
TU455978 other upstream 405036 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1016665 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 1413171 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 1413564 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 1415373 9369261 ~ 9369328 (+) True LOC113531687
XR_003403209.2 other downstream 513046 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 3036854 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 3040916 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 4576424 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 5249889 16034823 ~ 16038605 (+) True LOC113531248

Expression Profile