RNA id: XM_026921453.2


Basic Information

Item Value
RNA id XM_026921453.2
length 6829
RNA type mRNA
GC content 0.41
exon number 8
gene id ajm1
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11297974 ~ 11326055 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGCTCCTTAGGTTAAACCAGGAAGAGCCGGTTTAAAGAGTCGATTCGTTCGCTACCGACACATCACTACTGGCAACCCTATTCTACCGAGAAGAGAGGCAGTAGTAACGCTACGTATGCAGTGCAAAGCATACTAGGCCTGAAGAACGACATTATTGACCGACACTGTTTTTGTCTAACTGACATACAGCTTCCACTAAATTATGCGTCATTGTTTTGCATCTGGAAAGTGGATAATTATACTTATGGCGGTTGGATTACACCGTTATGAATAAGAATGAAAGAAGTGAGAAACGACTGTCAAAAATACATCACTGGGGTCACAGGCAAAGTGTATTGAGTAGAAGACCAGTCATCTTTCTGCACAGTGCACATGCTTCATCTACAGCATCCTACTTTCAACTGTTGGTGGCAAGATGGCTGAAGGATCCGTTAGTGGGACTCCAACAACGTCTAAGAGTAGATGCTGCTGGACTTTTGGAAAGGATGACCGAGCTAGGGTGCATGAGGTACAACATTATCATATTTGGGAGATAGATGAATATTCAAGTAAGATCACGTATCTGGAACCAGCAGATCATAACAACTCAAGCACTGCTCTTTCAGTTCTTTCTTAAAACAGCGCAGAACTATGGCTGGCCATCAAGGATGAAGGGTGATGAAGGTGTAGAAAAAGTGGGCATAACAGAAACCATGTTCACTGTAAAAGGCACTGGAAGAAGAAGCTGGCAAAAAATGTTATCTTCACACCTTTACTGAAGGCCGGGACAATCATCCCTTGTGATCTGAAGGTGGCCCTAACCAGCTGTGGGTTCTGGGGCAAATGCAGAATTCTTCTAGTGATAGTGAAGAGGATTTTCAGGGAATATTCACCTGAAAATGATTTGATGGAGAAAACTAATTGACTAAGATGACACTCACAGATCCACCCAACATACTGGAATCTGCTGTGTATCAAACTGCTAAACTGAATTCCATCTCTATTCACGTCAAGCTCTACTCTTCCTGTAAACAATGTGATTCCACATGCATCAGTGCACTGGAGGATCCCTGGAATAACCCAAAAGAGCACAGTCATATGTGCGATACTTCATCTCTACACCAGCCCAAATATAACACAATTGAAATGGAGTACCCATGTACAAGGGCTGACAGATATGTAGCCAACCCAGATGCTGCCTGGAATATGCTAGCCCAACATAAAAGGCACAAACTGCATCGTTTTTCATCCCCAGATCTTTATAACATGCAAGTAACCCCTCAAATTATGACTGCTGAAATGGCTGGTGAGGTTGCACTTAGGAGAAGAACAAGATCAAGAAGTGCTTCACGAGTCCAGACCAACTTCATTCCTTTAATAACTGATGGTTCTCCACCTGTGGTAAGAAGGAATCAAAAACATTCTCAGTGGAGGCCAGAGGTGTCTGCCAGAGAGTCCTTCTATGGACCGACTTGTACTGTCATTAATGAGGTACATCCCATCAAACTGCAACCACAGAGGACTGATACCATTAGGCACTCTCCTATTTATATGCCTGAAAGTTTGGAtgagggaaggactgttaaACTTGCCACTAGTCCTCATGTAAGATGTCGAGTGGACATTAAGCCTGATGAGACAGCATTGCAGCAACATGGTCAAAAGTCATCCATTTCAAGGGTGGACATACCATCGCAGAGGTATACCAGTAGTCGCAGTCAGAGTCTTACAGTACCTCCCCATGTCTCCACCTCCAGAACACCAACTCCCACTGAATATTTCAAAGGTGAATACACACCTACCTACCAGTATTCCCAAAGTATGCCAACCAGTTACATGCTGCCATTAAAGACTCCACCACAAAGGATACCTTCTCAATGGGAGATGAGACAATATGGAAGGGAGAGAAGGGCTAAGTCAAACCCCAATATGCCAACTAAATTCTCCAATGTAGACAATTTGGTGAAGTATGAAACTTCACCCCCAAAAAGAACTTACTATCAGGATGACTATTTTACCATTCCTAGCCAAACCTACTCTCCTAAAGTACATTATTTCCAAGATAAAAAAACTCACGTGGTTCATACTATACCTGACAGGCCATATTTCACAGAAGGAGATCTTTATCATACTGCGCCAGAGCAGTACATAATACAGACACCCCCTGCACGAACCTTAATTGGGGATGACCCTAGGACACATCAGGTTCAAACAGTTCCTCCTAGGATTTTCTATGTAGGTGACCCCTATGTACCTTCAATGGAAAGTTACATTCCAGCCCAAGCATACTACACAGAGGATAGGCGTCATGCACACATGGCTCAGCCAAAATCACATGATTTGTATGGCTCAGATGTATCTAGCTATTCCACACCCTATCCTTCATACACATCTCAAGTTACACTAGCAAAAGTTAGACAAGAGTCCATGCTTACCCCTTGGTACAGTAACCTGTGTATGGAGCCAACAAGAGCAGTAACTGATCCAAGGTCTCACTCAAGGTCTTGGGACAATATCCTCAATACTCATGTAGCAAGGGAACAACCTGTGTCTCATGGGAAAAGTGATGAGAATCTCCTGTGTCAAAGGAAACAAACTTTGTCAATAAATGACAGACCAAAACCTGTGGTTGTTAATCTTTCAAGTTCACCTAGACGTTATGCAGCTTTATCCTTGTCCGATAATTCCTTGATTGACAAAAGCCCAGTTGACATTAAGGGAACCTCAAGCAAACAGTGGTATGTCACTCCTGAAATCACTATTACAGATAATGATATCAAACCTTGCAAGGGCTATAAGGCAGAGGCACGCTCAGCCAGTTGGGATGTGCTTGATTCAAAAAGAGCTACAGGTGAAGATGCCTCTTACCATGAGACAATCCCCTTTCCAACTAAAGATAAGACACATCACAGCACCTCACTCCAACAAAGCTTAGAACAACTTGACAAGCTTTTAGCTGACCTGGTCATTGATTATAAACCACCCACTAGTATACAGGCCAGTGAAGACTTGATGGATCAACTCAAGAAGCTTATTGATGAAGAGGCAGTATCATCAGGAAGAAAGAATTCAAAGGCAGTATATGAGAGTAGTGTGTCCCTTGACAAACCATCAACATCTATAACAATAGATCACACCATAAGAGACACTGAGAGGAGATGTGATGGTCTGCAAAATAATGAGGAGTGCTCCCCTGACCAGagtccagatgaggatgagacAATGATGTGTTCTAACAATAAATGCCGTCGGACAGAGACATTGTTTAATGCTTGCCTCTACTTTAAATCCTGCCACAGCTGTTACACATACTACTGCTCTCGCAACTGCCGCAGGGAGGACTGGGCTATTCACAAGGAGAGCTGTCTGTATGGAAGAATTGGCAGCATATGTCGccacattattaaatattgtagaGAAACTGCAGAGGTCCACAAAGCTTTCTCACGTATAGCGAAAGTGGGATACCTGTCCCGAGGAAGAGGTGTGCTGTTTTTGAGCTTTCCAAACCCAGGATCATCAACAAATTTCCTTCAGTATGGCCTAGAAAGCCTCCTAATGTCTCCAACATATCTGTCCATACGTGAACTAGATTGTTACATGGATAACCTTGGAGATTATTGTAAGGAGCTCCAGGAAGCAGGTAAGGAATATGACCCTAATGAATGTTTTCTCTTGAATGTATCCATTGCTGTTGGTGAACAAGTGCCTGAGAGATCACCACCAAGGGTAAAGGCCCCAACAGTTAGGAAGTATGCCAAGGTTGCTTTAGCCTCTTACAGCCCAGAAGGGAATGTCCATGGGAAAGAACGTGAAATGGAGACTTTGATTCTCACTCCACCACCAGGTACAGCTGACATTGACAAGGAAGGTGAAGAGGGGAGAAAAGCTAGAGAGATTTGTTTCATCAACATTCAACGGGAGCTAAGAATTCGTGGGGTGTTCCTCCGCCATGAGTACCCCCATGTGTATCAGAAGCTCTGTGAGTTTGTGGAGAGCAACAGAAGGTTTACTCCTACCAGTATTTATCCTATTGACAAGAGAACTGGCAAGCAGTTCATGTGCATGATAATGGCAGCCTCTGAGCCACGGACTTTAGATTGGGTTGCCACTCCTCATCTTCTAGATGATATTATTTGAACAAATACACCTTTTAGGTATATAAAATTACAtcttatatagttatatagttatgTACTACAGATGAAAGATACATATATCAAGCTTATTGTAactgtttatatgtattttgttatttaaaaacatgcattaatgtATCTAATACATAGTATTACGTTGTTGGAAGAGGAAACCACAAattatttattgacattttgcTATGATGGATTAGAAGAGTATTTTCAGAATGGTTTCATGACAGCTTGCCAATCAATGTTACCAGCGGAAAGTCACTAAATCAGTCAGTACTCATTTATATGTGCTGACTGCTCATAATGATTGCAATGCCATGACTTAAAGACAAATGATATTCCTAATTTTTAGTCAGTCCCaccaaaacaaatttaaatgatGTACTGTGGCTAAATCAAGTACTTGCACACAGTTACTCCATATAAAATGATGTGAAGAATATAAATACAACGTAGGAATCAGATCACACttggttaaattttttttttttacaagatagatagatagacagactatatggccaaaggtatgggGAAACCTGGACACCACACGTTTATAAGCTTGTTGGACATCCTTTTATGAAACCATAGGCAGTCATATGGAATTTGTCCCAATGTTTGCAGCTGTAACAGCCtgtactcttctgggaagactttctaTAAGATTTtgaagtgtgtctgtgggaatttgtgcccatacagtcaaaagagcatttgtgaggtcagccACTGATAGTGGACAAGAAGGCCTGGCTTGCAGTCgacattccagttcatctcaaaggtgtgcagtggggttgaggtcactTGACAAActtgtcaaaccatgtcttttaTGGACTTTGCTTTGTTCACATGGGCATTTTCATGCTAAACAAGAAAGGGCATTCCCCAAACTCTTGCCActaagttggaagcatacaatgcTAATTACGGTTAAGCAAattaatgctatagcattaatattacccttcactggaactaaggggcctagttcaaaccctgaaaaacagatCCAGACCATTccccctcctccaccaaacttaAATGTTGGCACTGTACGTTCCAGTAGGTAGAGTTCTCCAAACCCAGATTTGTCCATCAGACTCCCAGACAGTGAAGatatgattcatcactccagagaacacctTTCCACTGCTCCTGAGTACAGTAGTGTGCAATGGAGGTCAACATGTCTAGCGGTGGCTTTACATTGCTCCAGCCAAAGCTTGGCATTGTGCtcttaggcttgtgtgcagctgctcagctatggaaacccatttcatgaagTTCCTGATGCACAGTTCTTGTGTTGATGTTGCTTTCAGAAGCTGTTTGGAGCTGTAGTGAATGATGCAACAGAAGACAGGTGATTTTTAGATGCTACACACTCAGCGGTGCAGCTCTGTGAGTTTGCGTAGTCTATTGCTTTGTGGCTATGAGATGCTTCCATTTCATAATAATAGAAGTTACAGTTGACTGGGGCAGATCTAACAGGGCAGAAATTTCATGAACTGACTTGTGGAAAcagtggcatcctatgacagtgccACATTTAGTCACTGAGATCTTCAGTAAgacccattctactgccagtgTTTGTCATGGTGACATGCAACTGTTAGCAGTTGGGTGTGGCTACAACACCTGAACTCAATAATTATgaggggtgtccacatacttttggccagatagatagatagatagatagatgtggtGTTTTCCAGTCCTGCAGAGCCCTTGCACCTCACATTGGAGAGTGAGGTATTTGGAGTGTGTACGAGAGGTTAAAAAAAGTTCTCTACCAATGTTGACAATGGTgcttttatatatgttttatagaATAACGTGAGCCATAATAGACTTGAAAAAcaattataatgaaaaaaaaaatcatattggTTAAACTCAACAAATCATTTGTTCACTACTATGTGGGTTCCTATGCTCTTACATTTCACTGCAAAATTAACACTGCAAAATGAATTACTTGCATGTTGTGAACATGCTGCCCTTGTAATCAATAACTAGACTTCGAAATATCTTTAAACAATTATGATTATCATCGGCATGCTATGAGTTAAGTGATCCAACTATGATTTATTACTTAGTGCACTTGGAAAACAGTGTGCTTTTACATCTATTTTTATCCTGATACattgatataatatttttattatatcatgtgtgtgtgaaagttttcAGTCACCAGgtaatttttaatgtttctagCAGTAAGTATTGAGAGCTGGACTTGTTATTCATTCATGATGACATTTTGCTAATCCCTGCTATATAAAAAACACTGTGTAATTACCATCTATGTGATTAAAATTATACTATGTTGTGGAAGTCTGAACTGGTATGAAACTGTAAGACCCTGTAAGAACAAGAAAATTGGTATTTATCATGCGTGCATACGCACAGCTGTACGCAGTGGCCATTGATAAATCCCACACTTTCTAAACTGATGTGCTCCTGCATGgccacactcatttgcataaagaaacaTCCACATTGCCATATATCGTAAACAATTCCCTTGAAAAAGCACAGTAGTCTGCTTGTTTCAAAGGATATGGAACATGCCAAAAGATCTAagaagatgaaataaagatacTGTTGCATGAAATAGAACAAAGCAAAATGGTTTGGTACTTTCATGAGTAGTTTGTCTAATAAAGAAATACAATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456419 lncRNA upstream 12215 11285326 ~ 11285765 (+) True G384989
TU456405 lncRNA upstream 152953 11144743 ~ 11145027 (+) True G384977
XR_003403219.2 lncRNA upstream 166113 11130876 ~ 11131867 (+) True LOC113531091
XR_004577443.1 lncRNA upstream 170095 11126383 ~ 11127885 (+) True LOC117596264
TU456400 lncRNA upstream 181398 11116378 ~ 11116582 (+) True G384973
XR_004577453.1 lncRNA downstream 4678 11330733 ~ 11344595 (+) True LOC117596271
TU456445 lncRNA downstream 21547 11347602 ~ 11347816 (+) True G385014
TU456456 lncRNA downstream 59453 11385508 ~ 11389515 (+) True G385025
XR_004577406.1 lncRNA downstream 300664 11626719 ~ 11640005 (+) False LOC117596234
TU456631 lncRNA downstream 300668 11626723 ~ 11640040 (+) False LOC117596234
XM_026922115.2 mRNA upstream 21004 11219932 ~ 11276976 (+) False mapkap1
XM_026922117.2 mRNA upstream 21004 11236887 ~ 11276976 (+) True mapkap1
XM_026922116.2 mRNA upstream 23480 11219058 ~ 11274500 (+) False mapkap1
XM_034300944.1 mRNA upstream 201839 11027269 ~ 11096141 (+) False fer
XM_026921858.2 mRNA downstream 135648 11461703 ~ 11517053 (+) False ttc33
XM_026921859.2 mRNA downstream 135782 11461837 ~ 11517053 (+) True ttc33
XM_026921841.2 mRNA downstream 317068 11643123 ~ 11681971 (+) True ptcd2
XM_034300614.1 mRNA downstream 318039 11644094 ~ 11681971 (+) False ptcd2
XM_026921977.2 mRNA downstream 391963 11718018 ~ 11832595 (+) False fcho2
TU455978 other upstream 918315 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1529944 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 1926450 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 1926843 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 1928652 9369261 ~ 9369328 (+) True LOC113531687
TU457909 other downstream 2495733 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2499795 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 4035303 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4708768 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 4822305 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile