RNA id: TU456445


Basic Information

Item Value
RNA id TU456445
length 215
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G385014
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11347602 ~ 11347816 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctggagagcagaaggggtcaggatcactggtatctcaggaccTATCCTATCCTCATGTGTAGCgtgagggagagattgttaggtatgctttttgtcccgtaatggttaaggacaaggAGGAGACTCTGGCAAAACTAGCTATGAcaacataactaaaagggagacccagaaggtaacacagacatgagggctccctgggacataaagcagccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577453.1 lncRNA upstream 3007 11330733 ~ 11344595 (+) True LOC117596271
TU456412 lncRNA upstream 36591 11297974 ~ 11311011 (+) False ajm1
TU456419 lncRNA upstream 61837 11285326 ~ 11285765 (+) True G384989
TU456405 lncRNA upstream 202575 11144743 ~ 11145027 (+) True G384977
XR_003403219.2 lncRNA upstream 215735 11130876 ~ 11131867 (+) True LOC113531091
TU456456 lncRNA downstream 37692 11385508 ~ 11389515 (+) True G385025
XR_004577406.1 lncRNA downstream 278903 11626719 ~ 11640005 (+) False LOC117596234
TU456631 lncRNA downstream 278907 11626723 ~ 11640040 (+) False LOC117596234
XR_004577407.1 lncRNA downstream 278933 11626749 ~ 11640005 (+) True LOC117596234
XR_004577408.1 lncRNA downstream 279845 11627661 ~ 11640005 (+) False LOC117596234
XM_034300913.1 mRNA upstream 21547 11297980 ~ 11326055 (+) False ajm1
XM_026921858.2 mRNA downstream 113887 11461703 ~ 11517053 (+) False ttc33
XM_026921859.2 mRNA downstream 114021 11461837 ~ 11517053 (+) True ttc33
XM_026921841.2 mRNA downstream 295307 11643123 ~ 11681971 (+) True ptcd2
XM_034300614.1 mRNA downstream 296278 11644094 ~ 11681971 (+) False ptcd2
XM_026921977.2 mRNA downstream 370202 11718018 ~ 11832595 (+) False fcho2
XR_003403209.2 other upstream 36749 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 967937 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1579566 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 1976072 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 1976465 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 2473972 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2478034 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 4013542 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4687007 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 4800544 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile