RNA id: TU456456


Basic Information

Item Value
RNA id TU456456
length 3608
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G385025
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11385508 ~ 11389515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCAACTTCAAATTTCTGGCCCATATACAGGGCCCACATACAGGAGACCCGGTTGAGCCTCTGAAAATCATTACAGATCTGTACACTGCCCTTGGTTTTCCGAACTACAACAATGGGGCTAGACCAGAGGTTAGAGGACGCCAATGATGCCATCTTGCAGCATTATGGCTTGCTCATCAATAGCCCAATGAGGGGCCTCTGGGACATGGTAGGGCCACTGCCTGATCACCACTCCAGTCAGGGTTTGAATGTCATGCTGGACCAGTTGTGTTAGGCCTGGTTACCCTCAAAAGACATCTGCAAATTGAACTATCAGCACCATGAGGTCTTGCTGCTGGGTGGGGGAATAATCCTCTCGCTTTTTAATGAAGGTATGCCACAGCAGGTCAGTGGgggccagttttttttttagcaaacatATAGATCATGCCCCACTACAATGGATAGCCAAGGCAAATGATACTAATTTCCACATCACTTGTTAGTTTCTCTCACTGCAAGATTGCTCATTTCAGGTGCAGCATCAAGTGGGGGTCCACCTCGGAATGCTGATGGGCTGTCCCGACACTACAGACTCTGGGCCCAGTCCTCTCCAGTGTTTGCTGAGCCAGCGTTTTTGTCGCTTATCATCAGGGCTGCCGCAATGCCGGATTCCCTCAGCTTAGAAGCTGCCAAATCTTCAGCCACACCACTGCAGGCCTCTCACCTCATCATCTACTCTCATGCTTTCCGTCAGCCCTGCCACTCCCTTTCCCACACTTATGATTAACTACAACCCCCATGAGTGTTTATTCACCCATTTCACATCTatcagtgtgtttatgttcGTCCTTGCTCCAGCACTTAACACCAAAGTGTTTGTTTAGGATGCATCATCCGtgcaatctgaataatgtatttgtcctgagcagttaagcTACCcactgttctttaaaaaaaatcctccaggtcttGCACATCATTCAGTTTTCTGCATATTCTGCATAGACCCCTTTCCAAAGTGGCTGtgggtgtaaattgttatttacatgtttcccggaagacaaaataatatcttatgtagcttctgaagggcagtactaaatgaaaaaaaagatctttaaacaaaataacaatttacactgatcaccctgttcaaaagtttacatccccctggctcttaatgtgtgtgtttccttcttgagcatcagtgaatgtttgcaccttttgaaATAGTTTGAGTCCTTCAGTTGTCCTCTGTGTGAAAaaatggatctcaacatcatacagccactgttggaaaggggtcagaAGATGCAGAAGATactggaaaagcaaataatgtggTGGACCTTgaggatttttctgaaaaacagtgGGCAGTTTGATATTGGTGTAGTGTATTGATATTGGCTGATATTCAAGGTTTTGGTATCGATATTgggaaagaaaaagtggtatcatgCCATCTCTAATAAcgatataaaaatatttttattttcttcataattatataattaaggCATTAAggcacaattaattaattaattaattatcacCCACTGTgtgaaaaatgctttaaaaatggaCAACTGCTGTGGTCCACTGTTAAATTTGCAACATTGATTAAACATGCTCGAAATTTGTGTAtgcatacactttatttataagCAGCCTAAAGATGTCACAAGAAAATTACTTACCTGGAACACTGATAGATTTCgtccaaaacacacaacaaaagtCTGAGCAAGAGGcaggcatgttttattttagcatagattttagactttttttaaagaatttttctACCACAAATGGTTAAGATGTAGGTCGTAGCATGGGACTTGGCATAGTGTggattaaaagtatttttaaactattgtTGCAGAAATTAGCTGCACAGATTGCACAGTTAAAGGGTTCTGAGGGTTAAGTCCAGAGAGAACAACTTGGGAAGATACATATTTCATTACTGACAAATATCACACCACAAAGACATAAAGAATGCTTAGTAGTGCTGTTACACAACAATAGTGGGTAATAGTAGTTATTTTATAACCAGTTTATATGTATTTAAGCAAATACTGTCTATGACAGTACACAGCCATGACAGTCCAAGTTATCGGCTAGGCTTTATTTGTGAAGGATTACCATGGAAAATACAGGCAGGTCCATACAGACTTGGACACAGAAAAagatattgttattttagctgtctaccacaggtatactggagttgaaattaaataatgaacaagTGCAGACTTTCTGCTTTAATTTAAGGGACCAacagtaattggacaattggcttctccactgttccatggccaggtttGTGGTATTCCTGCATTATTTCACTAAGTAAGCATATGCAAGTGTGACATTTGCATTGGTGAGCTCAAGAACACCAAAAGGCcagaaaaaacatggaaaacaacTGAATTCCTTCCCTgaaaaaaccccttcacaacagtcagccagatcaagaacactctccagaaGGTAGGCATAtttgtgtcaaagtcaacaatcaagagaagttTTCagcagagtaaatacagagggtttaccacaagtAAAACTAGTAAGCCTCAAAAAAGGAAGAACAGATTATAGTTTTCCAAAATCATCTAAATAAGCCCTTACAATTCTGCAAGAACATCcaatggacagatgagacaaaggtCAATCTGCAccagaagaaagaaacagagcaTCACTAGGGACAAAACCCAGCATCTGCTGATGTCTGTGGGTTCTAGGCAgccactgactgcaaaggatttgcaatcGAAtactaaaaatgacaatttaaattatcattgttagtttgtccaattatttttggtCCATTAAAAAGGGAAGGACCAcataaaaatgctgtaattcctGTAATTCACTGGTAAATCCCtgtaaattaaatctgaaagtctgcattttgagctcatattcagtatttaatttcacctccaatatactgtggtagacagatgaacaataacattatcaatgtccaaatatttatggacctgactgtatatggaaaataaaactgttaaatGTATGTTAAAGGATTGTTATCAGCCTTGCTAAAAACATTATACTGCCTGCAAGCGAGCAAAGACGAGAAAAGTGCTTACGAGTGTCCACTGTCTCCTGAATCGGGATAAAGCCAACGGGCAGTGTATCTTTAATGTCAATCAGCTTCATGTCCACCAGGACGTTTCCTAAATGACTCTGTGGAAAGATGCACACAATATGTAAAGATCATGAGGAAAGCAGTAGTGGCCTAGTGACTTAGACTTTAGCCCAGATAAACCAGAATTATTTCaaggaaaacatttttcaagcaatagTGTTTAAATTAGCCAACAATTGTTTGAGAGTTCTGTTGAGACACTGTCAGAGAGTGCAGCATCATGCAGGGCCGGTGTTCAAAGACAGCTGCAATGCAGCTACAATGATGTTCTCTGCAGTGTCTTGGGTAAGTGTGGTGCCTAATATTCTGCTGCTTTgttacatacatttaaaaagcttGGTGAATGCTTTAGTGTACTAACTCTCTTTGGTTTTCATAACATTCAGAGCATGAGAACAGCTTACTATTTTCACCAATGTAATGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456445 lncRNA upstream 37692 11347602 ~ 11347816 (+) True G385014
XR_004577453.1 lncRNA upstream 40913 11330733 ~ 11344595 (+) True LOC117596271
TU456412 lncRNA upstream 74497 11297974 ~ 11311011 (+) False ajm1
TU456419 lncRNA upstream 99743 11285326 ~ 11285765 (+) True G384989
TU456405 lncRNA upstream 240481 11144743 ~ 11145027 (+) True G384977
XR_004577406.1 lncRNA downstream 237204 11626719 ~ 11640005 (+) False LOC117596234
TU456631 lncRNA downstream 237208 11626723 ~ 11640040 (+) False LOC117596234
XR_004577407.1 lncRNA downstream 237234 11626749 ~ 11640005 (+) True LOC117596234
XR_004577408.1 lncRNA downstream 238146 11627661 ~ 11640005 (+) False LOC117596234
TU456656 lncRNA downstream 279978 11669493 ~ 11672040 (+) True G385187
XM_034300913.1 mRNA upstream 59453 11297980 ~ 11326055 (+) False ajm1
XM_026921858.2 mRNA downstream 72188 11461703 ~ 11517053 (+) False ttc33
XM_026921859.2 mRNA downstream 72322 11461837 ~ 11517053 (+) True ttc33
XM_026921841.2 mRNA downstream 253608 11643123 ~ 11681971 (+) True ptcd2
XM_034300614.1 mRNA downstream 254579 11644094 ~ 11681971 (+) False ptcd2
XM_026921977.2 mRNA downstream 328503 11718018 ~ 11832595 (+) False fcho2
XR_003403209.2 other upstream 74655 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 1005843 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1617472 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 2013978 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 2014371 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 2432273 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2436335 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 3971843 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4645308 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 4758845 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile