RNA id: XR_004577406.1


Basic Information

Item Value
RNA id XR_004577406.1
length 377
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id LOC117596234
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11626719 ~ 11640040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACAAAAGGCCCTGCGGGCTTCCGTAGGGACCGCAGTGCGGTTCAAACTGCGCCTACAAGCTGGTGCTGGAGAATCGCCGCATATGTACTGTGGTCCAGTATATCCTCCTCAGGCCCATCATCAACTGCCCCTTCGTCTGACTGGCTTTCAGCAACAGAGGACTGAGACTCAGTAGACATGCAGAGCTGTAGAGTGTTTGTGCTTTCCAGATAGGGACCATGCTGCAGCAAGGCAAAAGTGTGAACTCATTGAGCTAGTTGAATACACCTAAGATGGCTTACTTGAAAATGTGACGAAAAAGACAAATGGGTCGTCATCTGCAAGATTCAGACAGTGACAGTCTGCCGGGCATTTGAAATATCCATGCAACTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456456 lncRNA upstream 237204 11385508 ~ 11389515 (+) True G385025
TU456445 lncRNA upstream 278903 11347602 ~ 11347816 (+) True G385014
XR_004577453.1 lncRNA upstream 282124 11330733 ~ 11344595 (+) True LOC117596271
TU456412 lncRNA upstream 315708 11297974 ~ 11311011 (+) False ajm1
TU456419 lncRNA upstream 340954 11285326 ~ 11285765 (+) True G384989
TU456656 lncRNA downstream 29488 11669493 ~ 11672040 (+) True G385187
TU456672 lncRNA downstream 104191 11744196 ~ 11744931 (+) True G385195
TU456670 lncRNA downstream 193843 11833848 ~ 11835010 (+) False fcho2
XR_004577441.1 lncRNA downstream 542454 12182459 ~ 12190468 (+) True LOC117596260
TU456953 lncRNA downstream 640584 12280589 ~ 12322801 (+) True G385429
XM_026921858.2 mRNA upstream 109666 11461703 ~ 11517053 (+) False ttc33
XM_026921859.2 mRNA upstream 109666 11461837 ~ 11517053 (+) True ttc33
XM_034300913.1 mRNA upstream 300664 11297980 ~ 11326055 (+) False ajm1
XM_026921841.2 mRNA downstream 3118 11643123 ~ 11681971 (+) True ptcd2
XM_034300614.1 mRNA downstream 4089 11644094 ~ 11681971 (+) False ptcd2
XM_026921977.2 mRNA downstream 78013 11718018 ~ 11832595 (+) False fcho2
XM_026921975.2 mRNA downstream 78729 11718734 ~ 11835044 (+) True fcho2
XM_026921976.2 mRNA downstream 78730 11718735 ~ 11835040 (+) False fcho2
XR_003403209.2 other upstream 315866 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 1247054 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1858683 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 2255189 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 2255582 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 2181783 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2185845 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 3721353 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4394818 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 4508355 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile