RNA id: TU456656


Basic Information

Item Value
RNA id TU456656
length 2526
lncRNA type intronic
GC content 0.33
exon number 2
gene id G385187
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11669493 ~ 11672040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACAAACCAATAACCAATTGATCAACTGatagtttttaaaattgatACTGAATGAAAATATAACACTCAAAGTAAAATATTGCTGaactttattacaaaaataaacagtactGATTGTACCATGAAAATGtactgtgctttttaaaatgaaataaatatataaatattaacctATATCAACTATTAGTAAGTATTAAGGTAAATAAAGGATATACATCCAAATTaccaaacattaaaaatagtACAGGtcaactgtgtgttttttagctGTAATCTAGAAACATGGCATGTAAAGTTCATAGGAAAACTTTACAATAAATTTCcatttgttaacattatattacaatatgtaatatattttttacagtgtttattaatatatataccTTTCgttgtcagtgttttaaatccaCATCTGAAGTATTTCGCTCCGTGCAGAGTGTAGTCTCACgtgtcagtgattatttcatCAGTTTATTTGTGTCGGTTTTTATTTCTGCTCAAATATCATAACAGTGATAAGGGCTAAGAGAGGGCTCTATAGCTATGTGTGCATAAATCTCCTCAACCTTTTTTACATAGGAAGATAAACATTTGCTATCCTTTTTATTCGTGAAAATTGAAAACTTAATCTCCTGctatttttctaattaatacaTATATAGCCGATCAAAAACCTACCTCCAGGAAGTTGTATTGTGTGTGCATATTAAGCATGTATGACTTCTATTTTCATTGTTAATTAAGCTGAATGCATAATATGGTAATGTTAGGGTGATGTATACTGTTATGCTTCTGGCGTTAGTGTGGTTGTTGCGGTGAATTCTGCCACTACTTTGTTTAAAGTGTAGTGTTGACTTGAGTGTAGTGTTGAGGATGTAAATGGGTGTAGTGAGTTTTTATGGCTTGTGATATTGTAGTTTTGTATTGAATTAATAGAAAGCTGTTCTGTTATTCCTAGCTGCCTAGTGCGTCAAtatcagtaacagtaacagtcaATATCAATAACAGTCTATATCCGCCCACTAGGGATGCAGTGTTTATTATAGAGAATGTTTGAGGAGGAGCATTGTATATTATGCATATATTATTTACAAGGACAGATGTAGTTATTCAGGGTTGATTGCATGTATCTTATTATTGTATCTGCCTTATTTTCTGTGTTCAGGGTCACTTTAATAACTGGCACAAACTCCTATAGACAGCTATGGGAGCAGGTATGTTTTAACCATAAACTGTGCACCAGAGCTGAATGTGGATGCGAGTCGCCATAGGATCAGTGCAGAGCTTTCCTATGTATGTTTCTGCTTGAGTTAAAGTACAGAAATGTTTGGAAACATTGTTGGGTATCAAAAATTAAAGCACTGTGATTAATATTGCAACTAATAAACAATTTCTAAGGAAACCTGAATGACTGCAGACATGAGTTAAGTGATCATAAGATGCATGTGCTTACCTAATTTCATGAAGTCCTGGGGTTTTGTTTAGGAATTATAGGCTTTTGGATACACTTCTTCACGCTTATTTTTTGTTCCaaagtatttttattgaatattttgtcAAACATGAGACATTATAATACAATTAgacatctttttcattttttaaataacatccCTACCCACAACAATTCCCCCTGTTacacaattaaacatttaagctttctaatatgaagaaaaaaaaaaaattctactccTCTGAGATAACTGAGGGGTCCATCTTCTTTATCTGATCTAAAACAGGTTGCCAAGTAATATAAAACATGTTGGTACAGCCTCTTATagtgtgctgtattttttctAAGGCCATATAATGTAGTAAGTCCTTAAGCCATTGCTTGCTGGTTGGAGGggatttttctttccatttgagCAGTATTAACCTCCAGGCTAAAAGCATAGTAAAAGCGATCAGATTTTTCTTACTTTGATTAAAACTAAAGGATCGTGGTATGATACCAAGTATTGAAATTATGGCCTCAGGCTCTATACATGTCTTTTATGTATCAGAGAGAAATTTTGGACAAAGCCAAAGCATGTGAGATAGCGTAGCTGGCTCAATTTCACACCTATCACAGTTAGGGtctaaatttattttgaatttggcTAACTTCACTTTGGACCAATGCAGTCTGTGaacaattttaaattgaattactctgttttagacaaattgaagatgaataaatattatttaagacAGACTGCCACATGAGTTCTATATCTAATTCCACctcccattttctttttaattgagCTAGGGGTTCCAGGTTATGAGAATTGATTACAGAATAAATTTTACCTATGGCTCCTTTGGAATATGGACTCAGGTCCATAATAGACTCAAGAAGGGAACAGGGAGGCAGCGAAGGAAAGTGGCTCAATGAGGAagacatgattattttttaaaattcacttttTATAGCCATCCAGAGACTAaagttcaacatttttttcataattattgaCATAGGAAGTCCAGAAAATTGTGCTACAGTCCAGAAAATTATACGTGTTGAGGTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456631 lncRNA upstream 29453 11626723 ~ 11640040 (+) False LOC117596234
XR_004577406.1 lncRNA upstream 29488 11626719 ~ 11640005 (+) False LOC117596234
XR_004577407.1 lncRNA upstream 29488 11626749 ~ 11640005 (+) True LOC117596234
XR_004577408.1 lncRNA upstream 29488 11627661 ~ 11640005 (+) False LOC117596234
TU456456 lncRNA upstream 279978 11385508 ~ 11389515 (+) True G385025
TU456672 lncRNA downstream 72156 11744196 ~ 11744931 (+) True G385195
TU456670 lncRNA downstream 161808 11833848 ~ 11835010 (+) False fcho2
XR_004577441.1 lncRNA downstream 510419 12182459 ~ 12190468 (+) True LOC117596260
TU456953 lncRNA downstream 608549 12280589 ~ 12322801 (+) True G385429
XR_004577433.1 lncRNA downstream 688573 12360613 ~ 12403419 (+) True LOC117596248
XM_026921858.2 mRNA upstream 152440 11461703 ~ 11517053 (+) False ttc33
XM_026921859.2 mRNA upstream 152440 11461837 ~ 11517053 (+) True ttc33
XM_034300914.1 mRNA upstream 343438 11297980 ~ 11326055 (+) False ajm1
XM_026921977.2 mRNA downstream 45978 11718018 ~ 11832595 (+) False fcho2
XM_026921975.2 mRNA downstream 46694 11718734 ~ 11835044 (+) True fcho2
XM_026921976.2 mRNA downstream 46695 11718735 ~ 11835040 (+) False fcho2
XM_026921978.2 mRNA downstream 46700 11718740 ~ 11832595 (+) False fcho2
XM_026921979.2 mRNA downstream 46702 11718742 ~ 11832595 (+) False fcho2
XR_003403209.2 other upstream 358640 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 1289828 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1901457 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 2297963 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 2298356 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 2149748 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2153810 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 3689318 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4362783 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 4476320 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile