RNA id: XM_026921976.2


Basic Information

Item Value
RNA id XM_026921976.2
length 5528
RNA type mRNA
GC content 0.40
exon number 27
gene id fcho2
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11718018 ~ 11835044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGAATTCCTAACCGTGTGATGGTTACCTTGATTTTCCAGCTACAGTTTTGGaaagtaaaacattttagtGTAGTCCATGGATCCTTAGCCAGACATGTGTCTAACATAAGGCTGAGAGTTAGATTAATGCCAGACGCCACGGTAGATATAAACATAGAAAATGATAATGGAGGTGCCTCGCGTCTTGACATCGCAAGTGAAAaggtttgcaaaaaaaaaaaaaacgtcgcAGCGAACTGCAACGGCAGCATATTCAATGTGCTCCCTGGAGAAATTTTTGGTGACAGAAATAATGGGTTCGATGTCCTCTACCATAACATGAAACATGGCCAGATATCCAGCAAGGAACTTGCAGACTTCATTAGAGAAagGGCTACAATTGAGGAGACGTACTCCAGAGCAATAACCAAACTGGCCAAGTCTGCTAGCAACTTCTCTCAGTTGGGGACATTTGCTCCAGTATGGGATGTGTTTAAGGTGTCAACAGaaaagctgtctgtctgtcacatgGACCTGGTGCGTAAATTGCAAGACCTCATCAAGGACGTGCAGAAATATGCAGAGGAACAGACCAAAGCCCATAAGAAGACTAAGGAGGAAGTGGCACCCACGCTGGAGGCTGTGCAAAACATCCAGAGTGTGTCTCAGGCATtgcaaaaaagtaaagaaaactACAACAGCAAGACTCTGGAGCAGGAGCGCATGCGCAAAGAGGGTTCCACCCAGAGAGACCTTGagaagGCTGGGCTAAAGGTTAAGAAAGCCAGAGAAGTGTACAAGTCCTATGTGGAGAAATATGCCAGCACAAAGACTGAATTCGAGCAAAAAATGGCAGAGACCGCACAGaaGTTTCAGGACATTGAAGAAAGCCATATTGTGCAAATGAAGGAGATTATCCAGTCATATACTCACTTGATTGaggagacacacaaacagattgGAGAGGTGCAGAAAGAGTTTGTGAATAACATGGAGAACACGTCTGTGGAAAGTCTATTACAGAAATTGGCCGAGAACAAAGGGACCGGCAGAGAAAGGCCAGGGCCCATTGACTTTGAGGAATGCAATGTTTCTCTTACTACGGAAGGTGCTAAACCTAGAAAGAGGAAGACCTTTGCAATTCCAGGGCGAAGAAGAGACAAGGATACAGATTCCACTGAATCTACAGAAGTTGAAACTACTAACACTGCCAATGGAGCTCCCGCAGATATCTATGGACCCATAGATTTTCAAAATGCTAATGTACCTCAGGTGGATGAAGAGGGTTTCTGTATCAGACCGGAATTCAATGAAAATGATACCAAAGACAACAACTCTTCATCCAGTGATtcagatgaagaagatgaaCGTAGAAAATTTCATGTGGAAATCAAACCTGTACAGCCCAACAGTggcacacagcagcacaaagccACCATAGATGAGCTGAAGGCTTCTATTGGAAACATAACCCTTTCCCCCTTTGCTACGgtCCACATGAGGAGAAACCAGTCCAGTGATGAGTTGGGAAGGTCCAGAACACAGCAAACATCATATACAGAtAGACTGACCAGCAATGACCTGCTGTCTCTGGATCCATTTGGCCCCAATCTCTCTGGCTCCGCTTCCTCTGTGTCCTCCTCTGCAGATGAGCTTTTCATTCCCATCCCCCCATCTCCACCCAGAGCCATGAGCACTCCTCCAACCCTTCTCAAAAACCCAGGGGATGCTGCTACTCGCAATACTCCACTCAACGCTCCCAAAACCGGTATCAATCTACTTTCATCCTGGACTCAGAACCAGTTGGTGGCTTTTGTGCCTATTGATGGGCTAACCTGGGCTAACCAGGAAAGACCTCAGTCAGTGCCTATTTCCCAGTACGCCAAACACCCACCCAGCAAAACTGCAGATCCCTTTATTAGCATGGGCCAGAAGAACGAAAGCGCCCTCTCTTGGATGGCGGACCATACCATGTCACCCGCAGCTGGCCATATGCAGGATGTTCCTCCCTCTAACAGACCCACAACCCCTCTGGGCACAGCAGCAATAGTTCCTCCTCCTCGACCCTCGTCACGGCCCAAACTGCCTGCAGGCAAACTGACCGGCATCAATGAGATTgcACGGCCATTCAGCCCTTCTATGGCAACCAACTCTAGTCCTCTGCCTACTGCACCTCTAGCACGGGCTGAAAGCTCATCCTCTCTGAGCTCTAATGCCTCACTGAGTGCGAGTAACACACCCACCATCGGGACATCTCGTGGCCCCAGCCCGATCACATTAGCATCCCAGGATTCACTTCCCATAGCTGTTGCTTTCACAGAGTCAGTTAATGCCTACTTCAAAGGAGCTGATCCCAGCAAGTGCATAGTGAAGATCACGGGGGACATGACACTTTCCTTTCCCAGTGGCATCATTAAGATCTTCACATCCAGCCTCTCACCAGCTACACTCAGCTTCAGACTCAGAAACACTAGCAAACTGGAGCAGATACTACCAAACCAGCATCTTCTACAcagTGACTCCTCACAGAATGACACTAACAGTAAAGATTTCTGGATGAATATGCCTGCGCTGACCGCATATCTCAGGAAGGCCTCAGAACAGAATCCAACTTCCTCTTACTACAATGTGGACATCCTCAAGTACCAGGTGTGTTCTAATGGGATTCAGTCAACGCCGCTAAACCTGGCAGTGTACTGGAAGTGTGCACAGAGCACTACAGACCTGCGGGTGGATTACCACTACAACCCTGAGGCCATGCAACCGCCCGGACCACTCTGTAGCGTGCAGGTCCTTGTACCTGTCAGCGGTGGTGTCACCAACATGCATTCACTCCCCAGTGCCATCTGGAATCCAGACCAAAATAAGTCATTATGGAAGCTGAATGACATCTCTGAGAAGTCTGAAAATGAAGgttctGGCTCTCTGAGGGCAAAGTTTGAGCTCTCAGATGGCCCCTCAATCCCAGCCACTCTGGCCGTTCAGTTCTTTAACGAGGGCAGTACTCTCTCTGGAGTAGAAATGGAACTGGTCGGATCTGGATATCGACTCTCCCTCAGTAAGAAGAGATTAGTCTCTGGGCGATATATGGCAGACTGCTGAGATGTCAAACCAGAGGCACATTCTATCAAACTATTGAAAAATTAAAGGATTActtttcattatcattttattgCATCTTCTCTCATCACGGCAGAGGTTATTGGAAGGTGAAACAAAAGGGCTGTCACCCCGATGGCTCCTCTTATGCCTTTAAATATTCTTATCATTTTGAACTATCCTTCCATCCAACCAAGTGTATCTTTTTGGGAATGAAAGAACTTTTTACTACACTTTTTAGTCATGTAGCACTGAGAATCAAACACTGtctaaaaaaactaataaagaaaACCAATAAGGAATGTCAGAATACTgaagaatgagaaaatgaaaagtaataaCCTGatatttttgattaatttttgatttttatataGTGTTTGTTTTCATGATAAATTTTAATATGATATGACATACAGAAAATATGCAGtgtaaaacaaaaggaaaaagaaaaaatatctgcACTAACAATCTTCCAGGCCATTTGGATAGACATTAACCTCTTATTTGTATATTCATCTTTAAGTCCTgatcataaataaacaaacaaaaaaattttttttttaaataataataataaattaattaattaataaaccaaCAAAATTGtcagtgagggggaaaaaaagcctcAGGCAATCTGAACGTAACGTTTTATCCATAAAGCTACACCTCCAGGACAGGCCTGAGTTCTTACTTGTAAAATCATTGTAGCATTATTAATTGTTCTCTGGATTCTGCCTAATCTAGACTTCACAACTATTGGTGTACTTTTGACAAACTAGCCCTTAGGTATAATCCATACAGTGGCTAAAATTTCATATATCTCTCAATTGTTACTATTTCTCACAGTACAAGTGCAATGAAGGTATAAGCtattaaatgaatcattatgTGACTTCTGTTTAGGTTTTAATTTTAGTGTAAAGAATTCTGGTCAGTTTTTTGATAATTTtcaacaaaaagaagaaaaccaaAAACTTGGAAAACTGACCTTAGTGCCTATTTTCTAATCAAACTTGTTGATTTCTTTCTCTACAAGCTTATCTTTGTTGCTCTAAGTGCCAGTtctattttatactttttttgtaCTGGGATGCTGAAGGGAAAATACTCATAAATGACAACTGTAAATGAATGCCTTTCTAAAAAATTattggttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacataatcaAAGTAATAtggtgtggtgtgttctgaatatttattacagaactgATGATCTGATGCCCTTTAACCAGCTGAACATGTTCTTGCTGATCTTTATCTTTGGATATTCCCTGTAGTTGGGTAATCCTACTTGCAATGAATTACTAAATGACTCGGACCTAGATGACCCAAATATGACCTATGGCCCAATACACACAAAGGCACTGAGAAATTATAGTGGAAATGAGAATGGATTCCCCTATTCCAAATTtttgatattaatttattattttttaatattacagtaatattctactgtaacattaaattatatattaatatagtaCCAAAATTTCagcaatttcattattttctaccAAAACTTAGCAATTTAAGATTGCTTCAGACTTGGactacctacttgtttcctatAGACACAGGGCATGCCTGTTGCATGTCTAAGTAACTAACCATTCAGAACTTCTAAACAGATCCAAAGTGCTTTAATGGGCTAAACAcagggtttgttttgtttttcttttttttttttttcttttttttaaataatggctCTGTGCCTTATATCCTTCTCTTAAGGGTCAATTGTCTTAAGGGCTACTTTAACCAGTGGGAAGATGGAGATAGATATACCCTAAATAATACAAAGGAATGTTTGATAtgtactaaaaaaattaaatgtgtaaatgtgtaatgtgtaaatgtgtaacatTCTAGGAAAGTTTTAGGTTTTTTAACGACAGTATCTTTTTCCACAGGATCATTTTTATGACGTAACTAGGCAGAGTTTTTAAATTCCTAATCTTTACTGTTTTATTGGAAATGTTTaagatgtatgtaactgtattaaaaaaataataaaatggcaTTGGGCGTTTAGTGTGGAGGCAGATATTAACCAGTGGACATTAGGGTCAAAACTGAACTGTGTGACACTTTTTCTGTCCAGTATAACTAAATGTCTGATTGTGTATTTTAGCAAGCTGGTTCTTGCTGCCTCTACAACCATCAGATAAATGTGTGAAGGCATTTTGGAGCTTCTCAAATATTGTCTCTTGCTCCTTTTGGTCTCATGTTCATGGATGTGTTAAATGATctgtgaaaatgatttttttcaatttttacaaatttaccACTTTGTTTTCTCATGATTTCAATGtctgtaataaatgtgtaatatataaatcTATACAAATATAAGAACTATTACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456656 lncRNA upstream 46695 11669493 ~ 11672040 (+) True G385187
TU456631 lncRNA upstream 78695 11626723 ~ 11640040 (+) False LOC117596234
XR_004577406.1 lncRNA upstream 78730 11626719 ~ 11640005 (+) False LOC117596234
XR_004577441.1 lncRNA downstream 347419 12182459 ~ 12190468 (+) True LOC117596260
TU456953 lncRNA downstream 445549 12280589 ~ 12322801 (+) True G385429
XR_004577433.1 lncRNA downstream 525573 12360613 ~ 12403419 (+) True LOC117596248
TU457126 lncRNA downstream 634683 12469723 ~ 12470164 (+) True G385588
TU457132 lncRNA downstream 712797 12547837 ~ 12548116 (+) True G385594
XM_026921841.2 mRNA upstream 36764 11643123 ~ 11681971 (+) True ptcd2
XM_034300614.1 mRNA upstream 36764 11644094 ~ 11681971 (+) False ptcd2
XM_026921858.2 mRNA upstream 201682 11461703 ~ 11517053 (+) False ttc33
XM_026921859.2 mRNA upstream 201682 11461837 ~ 11517053 (+) True ttc33
XM_026921454.2 mRNA upstream 392680 11297980 ~ 11326055 (+) False ajm1
XM_026922398.2 mRNA downstream 167234 12002274 ~ 12010222 (+) True btf3
XM_026922399.2 mRNA downstream 167299 12002339 ~ 12010222 (+) False btf3
XM_034300660.1 mRNA downstream 191020 12026060 ~ 12118438 (+) True arhgef28a
XM_034300659.1 mRNA downstream 201855 12036895 ~ 12118438 (+) False arhgef28a
XM_034300662.1 mRNA downstream 201855 12036895 ~ 12118438 (+) False arhgef28a
XR_003403209.2 other upstream 407882 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 1339070 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1950699 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 2347205 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 2347598 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 1986748 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 1990810 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 3526318 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4199783 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 4313320 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile