RNA id: TU456672


Basic Information

Item Value
RNA id TU456672
length 695
lncRNA type intronic
GC content 0.36
exon number 2
gene id G385195
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11744196 ~ 11744931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaacacttttaaTCAGAGTACAGCATCAGGTcagttaaactcctgggatattgatctggtcagttaagtagcagagggggttgttaatcagtttcagctgctttgatgttaatgaaattaacaacaggtgcactagatgggcaacaatgagacgacccccaaaacaggaatggttttacaggtggaggccactgacgtttttttctctactcatcttttcttttttttgaattgaagtttttattgctttttttggAAAGCTGACAGGTAACAGAAATACAACATTACCATAATTATGCAAGGTTACAGATTTTTACAGCCACATTTTGACcatgtaataaaatacaatgcaagACAGAACACAAAATTGTTACTCGATTAAGCATGAATTCATAGGATGCAATTTCTACCTTTGCACTGGCCCACTCTTTCAATTCTGGGGCTTTCACTGTCTTCTAGTGTCTCAAAATAATCCTACTTGCCATTGTAATACATACcataataacagaaaatacacGCTTTGAAACATTAGGTATTTGAGACTTGTCGCCTAATAAACACAATTTAGAGGTTAAAGATATTTCGGAGCCATACCAGCAACTTAAGACATCCATAACTTGTTTTCAGAATGGTTTAACAAGACTACATTCCCAAATACAATGTACTGGCATTTCCAACATATTGTCTTTCATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456656 lncRNA upstream 72156 11669493 ~ 11672040 (+) True G385187
TU456631 lncRNA upstream 104156 11626723 ~ 11640040 (+) False LOC117596234
XR_004577406.1 lncRNA upstream 104191 11626719 ~ 11640005 (+) False LOC117596234
XR_004577407.1 lncRNA upstream 104191 11626749 ~ 11640005 (+) True LOC117596234
XR_004577408.1 lncRNA upstream 104191 11627661 ~ 11640005 (+) False LOC117596234
TU456670 lncRNA downstream 88917 11833848 ~ 11835010 (+) False fcho2
XR_004577441.1 lncRNA downstream 437528 12182459 ~ 12190468 (+) True LOC117596260
TU456953 lncRNA downstream 535658 12280589 ~ 12322801 (+) True G385429
XR_004577433.1 lncRNA downstream 615682 12360613 ~ 12403419 (+) True LOC117596248
TU457126 lncRNA downstream 724792 12469723 ~ 12470164 (+) True G385588
XM_026921841.2 mRNA upstream 62225 11643123 ~ 11681971 (+) True ptcd2
XM_034300614.1 mRNA upstream 62225 11644094 ~ 11681971 (+) False ptcd2
XM_026921858.2 mRNA upstream 227143 11461703 ~ 11517053 (+) False ttc33
XM_026921859.2 mRNA upstream 227143 11461837 ~ 11517053 (+) True ttc33
XM_034300914.1 mRNA upstream 418141 11297980 ~ 11326055 (+) False ajm1
XM_026922398.2 mRNA downstream 257343 12002274 ~ 12010222 (+) True btf3
XM_026922399.2 mRNA downstream 257408 12002339 ~ 12010222 (+) False btf3
XM_034300660.1 mRNA downstream 281129 12026060 ~ 12118438 (+) True arhgef28a
XM_034300659.1 mRNA downstream 291964 12036895 ~ 12118438 (+) False arhgef28a
XM_034300662.1 mRNA downstream 291964 12036895 ~ 12118438 (+) False arhgef28a
XR_003403209.2 other upstream 433343 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 1364531 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1976160 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 2372666 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 2373059 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 2076857 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2080919 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 3616427 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4289892 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 4403429 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile