RNA id: TU457132


Basic Information

Item Value
RNA id TU457132
length 280
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G385594
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12547837 ~ 12548116 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagaattttaggatgagacgacagtcatttatgacactatgctcaatgctgtaggggaacatggcacctggtgaggctacggtcagagccccagtaccgctgacagccgtgcgtcatacgtcattacgtgatttgtacgtcattgcacatgcgcagaactatctggtttcattttcaatccgatgaagtgtttacatgtcctctccatcggattagaaaaggtttaaaccaccccttacgatccgaatgaaattttaatcggttttggtcAATTCATTCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457126 lncRNA upstream 77673 12469723 ~ 12470164 (+) True G385588
XR_004577433.1 lncRNA upstream 144418 12360613 ~ 12403419 (+) True LOC117596248
TU456953 lncRNA upstream 225036 12280589 ~ 12322801 (+) True G385429
XR_004577441.1 lncRNA upstream 357369 12182459 ~ 12190468 (+) True LOC117596260
TU456670 lncRNA upstream 712827 11833848 ~ 11835010 (+) False fcho2
XR_004577380.1 lncRNA downstream 78376 12626492 ~ 12627278 (+) True LOC117596213
TU457162 lncRNA downstream 170569 12718685 ~ 12719442 (+) True G385624
TU457237 lncRNA downstream 242815 12790931 ~ 12800917 (+) False zgc:63972
TU457239 lncRNA downstream 253243 12801359 ~ 12802002 (+) True G385698
TU457238 lncRNA downstream 256912 12805028 ~ 12805853 (+) True G385697
XM_026921842.2 mRNA upstream 261713 12269176 ~ 12286124 (+) True hexb
XM_034300578.1 mRNA upstream 261713 12269177 ~ 12286124 (+) False hexb
XM_026921619.2 mRNA upstream 283753 12253990 ~ 12264084 (+) False LOC113531115
XM_034300496.1 mRNA downstream 57165 12605281 ~ 12716830 (+) True fibcd1
XM_034300497.1 mRNA downstream 57165 12605281 ~ 12716830 (+) False fibcd1
XM_034300498.1 mRNA downstream 57165 12605281 ~ 12716830 (+) False fibcd1
XM_034300499.1 mRNA downstream 79126 12627242 ~ 12716830 (+) False fibcd1
XM_034300429.1 mRNA downstream 242785 12790901 ~ 12800735 (+) True zgc:63972
XR_003403209.2 other upstream 1236984 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 2168172 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 2779801 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 3176307 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 3176700 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 1273672 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 1277734 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 2813242 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 3486707 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 3600244 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile