RNA id: TU457238


Basic Information

Item Value
RNA id TU457238
length 826
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G385697
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12805028 ~ 12805853 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGGGTCACATCAGGGGGTCGGTGCAATGCACCCTTCATACCCTCATCACTTGGGAACACTGCTCTTTTTGAGGACAGACATTTCAAATCAATGTCTTACTTACTTTGCTAGAACAGAGGGCATAGACAAAAGTGTATGGCCATACTCTTGACTGGAGGAAGCCATATGATGGATCACAGAGAAGCTTGATTCAAGGGGAATGATGGCCACCAACGTGTGGCAGACATTATTGTGCCTTATCAGTTAGGAAGTCCAGTATGGGTGGCTCCAGATGCTTTCTGAAATGCATGGGCTATTAACTGCAGCTAAGGGCATATGCAGgttttataaatattgatatttattctttaataattgttaatattaacAGTTGTGGGACCCATCTTATTTATAAAGTTGCATTCTTTCTAGCAGTTAAATAGCTACCATTCCTTATAGGCTTGAGAGTTTACACACAAGTGCTGTTGTGTCATGTTATAAGTTCATATTGGCATTATATGCATACATATTAATGCTCTGACTACACATAAAACATCTCGACAACTTGGATGTAATGCAAATATCATACATACCttgtatttaaacattattagtATGCATAAATTATATTCGATATGTATCCTGGGAGTATCTGTCATGAAACTTTTAAAACCACGCCATCAAAATTTCCAGCCAGTGATGGAATACAAATGACTGAAAAATCCATCAGATCTAAGAGACACAACACTGTTAAAATGGTTAAGGGCTTTAATACCAATACACAGGATTGAAAATGATACATGTGGAACAATATTGTTATGTCAATTTTGGGGAAATATGGGtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457239 lncRNA upstream 3026 12801359 ~ 12802002 (+) True G385698
TU457237 lncRNA upstream 4111 12790931 ~ 12800917 (+) False zgc:63972
TU457162 lncRNA upstream 85586 12718685 ~ 12719442 (+) True G385624
XR_004577380.1 lncRNA upstream 177750 12626492 ~ 12627278 (+) True LOC117596213
TU457132 lncRNA upstream 256912 12547837 ~ 12548116 (+) True G385594
TU457236 lncRNA downstream 1470 12807323 ~ 12809012 (+) True G385695
TU457385 lncRNA downstream 189192 12995045 ~ 12996216 (+) True G385823
TU457472 lncRNA downstream 346139 13151992 ~ 13152207 (+) True G385892
TU457591 lncRNA downstream 380853 13186706 ~ 13186929 (+) True G386004
TU457602 lncRNA downstream 407666 13213519 ~ 13213978 (+) True G386015
XM_034300429.1 mRNA upstream 4293 12790901 ~ 12800735 (+) True zgc:63972
XM_026922499.2 mRNA upstream 4293 12790901 ~ 12800735 (+) False zgc:63972
XM_034300497.1 mRNA upstream 88198 12605281 ~ 12716830 (+) False fibcd1
XM_034300956.1 mRNA downstream 190405 12996258 ~ 13020139 (+) True ttll11
XM_026921946.2 mRNA downstream 395951 13201804 ~ 13272662 (+) True specc1
XM_026922454.2 mRNA downstream 468032 13273885 ~ 13285031 (+) True adora2b
XM_026921567.2 mRNA downstream 711617 13517470 ~ 13522726 (+) True c27h11orf54
XM_034300709.1 mRNA downstream 717164 13523017 ~ 13529674 (+) False LOC113531575
XR_003403209.2 other upstream 1494175 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 2425363 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 3036992 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 3433498 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 3433891 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 1015935 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 1019997 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 2555505 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 3228970 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 3342507 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile