RNA id: TU457602


Basic Information

Item Value
RNA id TU457602
length 460
lncRNA type intronic
GC content 0.44
exon number 1
gene id G386015
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13213519 ~ 13213978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGACATTCTGCAACCTGAAGAAAAGTTTTGACTAGTATGCATTCCCAGTGGCAAACTATCAAGCTATCCTTGCATTGTGCAGACAATGCTGCTATGTACACCTGTAGGGTAGACTCAAAAGAGTAATTTGAGTCAAATCTGCAAAACAACATGCAAGAAAGTGATCTATGCCCAGTGTTTCACTCCATAGTGAGAAACACTATGGGGTGAGACTCTAGGCATAATTCCCATCCACATGCTTGTGTACAACCAGGGTGTAgaagagctgtagaacacaccCATAAGAACTCGTCTGACCCTTTTTTCAAACATGCCATTATGCTGGGATCACTCTCAGGAACAGACCCTTAATTTCAAGGTCTTCTGTGCTACAGTGACCAGTTCATCAGGGACCAAGGCTGAGACCCTTGCAATAACATTAGCAATGGGTTGAGCTGTGGCCAGAATGGGGATATCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457591 lncRNA upstream 26590 13186706 ~ 13186929 (+) True G386004
TU457472 lncRNA upstream 61312 13151992 ~ 13152207 (+) True G385892
TU457385 lncRNA upstream 217303 12995045 ~ 12996216 (+) True G385823
TU457236 lncRNA upstream 404507 12807323 ~ 12809012 (+) True G385695
TU457238 lncRNA upstream 407666 12805028 ~ 12805853 (+) True G385697
TU457585 lncRNA downstream 72985 13286963 ~ 13288280 (+) True G385998
XR_004577393.1 lncRNA downstream 137070 13351048 ~ 13362308 (+) False LOC117596226
XR_004577394.1 lncRNA downstream 137098 13351076 ~ 13362308 (+) False LOC117596226
TU457662 lncRNA downstream 147587 13361565 ~ 13363588 (+) True LOC117596226
TU457730 lncRNA downstream 263436 13477414 ~ 13477778 (+) True G386136
XM_034300956.1 mRNA upstream 193380 12996258 ~ 13020139 (+) True ttll11
XM_034300429.1 mRNA upstream 412784 12790901 ~ 12800735 (+) True zgc:63972
XM_026922499.2 mRNA upstream 412784 12790901 ~ 12800735 (+) False zgc:63972
XM_034300498.1 mRNA upstream 496689 12605281 ~ 12716830 (+) False fibcd1
XM_026922454.2 mRNA downstream 59907 13273885 ~ 13285031 (+) True adora2b
XM_026921567.2 mRNA downstream 303492 13517470 ~ 13522726 (+) True c27h11orf54
XM_034300709.1 mRNA downstream 309039 13523017 ~ 13529674 (+) False LOC113531575
XM_034300710.1 mRNA downstream 309636 13523614 ~ 13631816 (+) False LOC113531575
XM_026922381.2 mRNA downstream 309637 13523615 ~ 13529673 (+) True LOC113531575
XR_003403209.2 other upstream 1902666 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 2833854 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 3445483 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 3841989 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 3842382 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 607810 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 611872 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 2147380 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 2820845 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 2934382 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile